Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC112Q8NEF3 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC112Q8NEF3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC112Q8NEF3 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC112Q8NEF3 U3.12-201ENST00000364498 214 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 MOB4-205ENST00000409916 829 ntTSL 3 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 MORF4L1P6-201ENST00000418771 268 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 HGF-207ENST00000453018 721 ntTSL 3 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 RPL23AP70-201ENST00000483361 460 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 RNA5SP148-201ENST00000516527 94 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 RNU1-104P-201ENST00000517280 175 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 MTCO1P47-201ENST00000523889 1271 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 AC091544.4-201ENST00000555268 342 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 MIR5694-201ENST00000581190 76 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 MIR3124-201ENST00000582636 67 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 AL121917.1-203ENST00000605534 577 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 AL160394.1-201ENST00000624765 724 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 CTSLP2-204ENST00000629029 392 ntBASIC2.53□□□□□ -2
CCDC112Q8NEF3 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC112Q8NEF3 SET-203ENST00000372688 801 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 RNU6-1074P-201ENST00000383995 104 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AL591416.1-201ENST00000404015 867 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 ATF1P1-201ENST00000406040 927 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 RNU2-17P-201ENST00000410290 190 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC010099.1-201ENST00000455434 375 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 RPS3P1-201ENST00000456781 192 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC079804.2-201ENST00000490376 200 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC008413.1-201ENST00000511864 177 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC013562.2-201ENST00000611632 603 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC025016.1-201ENST00000616746 682 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 AC243829.7-201ENST00000633081 225 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 MTND2P41-201ENST00000637599 773 ntBASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC112Q8NEF3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 RNU6-252P-201ENST00000363232 107 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 OR5H15-201ENST00000383696 930 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 SNORA70B-201ENST00000384210 135 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 MIR518C-201ENST00000384822 101 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC096533.1-201ENST00000411645 353 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 RPL7P30-201ENST00000420888 709 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC092427.1-202ENST00000430569 476 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 TPTE2P1-204ENST00000435256 593 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 UBE2V1P5-201ENST00000440070 405 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 RAB11AP1-201ENST00000442978 646 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 FTH1P25-201ENST00000447665 469 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC090096.1-201ENST00000489168 390 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 MLLT10P2-201ENST00000506434 249 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 HMGB3P3-201ENST00000510526 400 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC026436.1-201ENST00000510537 270 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC008716.1-201ENST00000511084 513 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC083923.1-201ENST00000523708 376 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 CASP1-212ENST00000531166 300 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC007621.1-201ENST00000604544 437 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC004775.1-201ENST00000607389 753 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC006329.2-201ENST00000611491 394 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 MIR6766-201ENST00000622641 72 ntBASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.51□□□□□ -2.01
CCDC112Q8NEF3 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC112Q8NEF3 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC112Q8NEF3 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC112Q8NEF3 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
CCDC112Q8NEF3 AC135776.4-201ENST00000624300 1904 ntBASIC2.5□□□□□ -2.01
CCDC112Q8NEF3 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC112Q8NEF3 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms