Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AP1S2P1-201ENST00000457344 379 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 LSM6P2-201ENST00000552208 177 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 PSMA3P-201ENST00000555485 635 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC087499.8-201ENST00000578406 226 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC010525.2-201ENST00000590920 195 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 HSPE1P14-201ENST00000605812 302 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AL133255.1-201ENST00000606374 441 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AL603758.1-201ENST00000618654 241 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC140113.4-201ENST00000622087 222 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 AC105074.1-201ENST00000623380 3095 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 MAPK10-286ENST00000641208 8747 ntBASIC5.33□□□□□ -1.56
USHBP1Q8N6Y0 KPNA2P2-201ENST00000419546 1489 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC008079.2-201ENST00000623543 20396 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 NOL8P1-201ENST00000508336 3529 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 SNORA60-201ENST00000362396 134 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 SNORA63.1-201ENST00000362493 131 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 Y_RNA.138-201ENST00000363462 102 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 RNU6-343P-201ENST00000364709 104 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 TXNP7-201ENST00000406296 293 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 SNORA11.1-201ENST00000408133 129 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 RNU2-9P-201ENST00000410194 145 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC009161.1-201ENST00000417306 376 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 RBMY1KP-201ENST00000423480 476 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC091286.1-201ENST00000431233 461 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 GPR143P-201ENST00000434155 205 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC007991.1-201ENST00000522680 631 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 OR4R1P-201ENST00000529879 463 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC087241.2-201ENST00000535801 324 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC012182.1-201ENST00000570133 895 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 MIR3936-201ENST00000584304 110 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AL353997.4-201ENST00000586196 166 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC012468.1-201ENST00000604888 430 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC093913.1-201ENST00000614178 329 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AL354950.2-201ENST00000617939 290 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AC022106.2-201ENST00000620114 757 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AL356585.4-201ENST00000623078 1229 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 ZNF736P3Y-201ENST00000428264 1465 ntBASIC5.32□□□□□ -1.56
USHBP1Q8N6Y0 MTND4P27-201ENST00000450813 1354 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC009313.2-201ENST00000417893 1941 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AL161781.1-201ENST00000354277 403 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 RNA5SP399-201ENST00000364003 117 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 RNA5SP372-201ENST00000390836 115 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC016769.3-201ENST00000396562 315 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AL023807.1-201ENST00000407932 359 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 MTND3P8-201ENST00000412909 339 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC236972.2-201ENST00000434979 310 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 IFNA20P-201ENST00000436840 528 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 NANOGP10-201ENST00000453325 895 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 RPL36AP13-201ENST00000457490 317 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 RNU6-1218P-201ENST00000458990 108 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 PPIAP15-201ENST00000479662 484 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 TMEM248P1-201ENST00000510579 951 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC107934.1-201ENST00000522215 217 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC022616.3-201ENST00000523940 148 ntBASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.31□□□□□ -1.56
USHBP1Q8N6Y0 YPEL5P3-201ENST00000547227 352 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms