Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 SNORA2.3-201ENST00000383920 135 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-146P-201ENST00000384602 108 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 MIR223-201ENST00000385204 110 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-817P-201ENST00000391083 104 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 RPL21P67-201ENST00000402896 478 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AL035079.1-201ENST00000405210 287 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 RNU2-23P-201ENST00000410545 195 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-55P-201ENST00000411092 107 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 BX510359.3-201ENST00000422168 306 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AL139148.1-201ENST00000427122 680 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 CYCSP43-201ENST00000438233 310 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AC112492.4-201ENST00000456549 352 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AC104564.1-201ENST00000493028 407 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AC023424.1-201ENST00000496058 459 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-513P-201ENST00000516104 104 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 RNY3P15-201ENST00000516297 97 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 SCARNA16.2-201ENST00000516520 172 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 IGKV2D-36-201ENST00000518643 226 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AC007991.1-201ENST00000522680 631 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 SUB1P3-201ENST00000564581 315 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 SUMO2P15-201ENST00000604285 278 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AL158032.1-201ENST00000605401 106 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AL021879.1-201ENST00000611756 288 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 MIR6826-201ENST00000617808 98 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AL606534.2-204ENST00000635008 178 ntBASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
UBE3DQ7Z6J8 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 RPL23P2-201ENST00000320371 421 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC110754.1-201ENST00000399740 601 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 RNA5SP56-201ENST00000410277 118 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AL356968.1-201ENST00000416622 474 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AL591212.2-201ENST00000433923 257 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 TPT1P13-201ENST00000449760 499 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 CYCSP34-201ENST00000458172 304 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-953P-201ENST00000459154 107 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC090686.1-201ENST00000481577 749 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC009901.1-201ENST00000506703 541 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 NDUFB5P1-201ENST00000508134 564 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 RNA5SP34-201ENST00000516887 130 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AP006587.4-201ENST00000526053 529 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC005357.1-201ENST00000588399 301 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC067852.3-201ENST00000589177 561 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC016727.2-201ENST00000603988 621 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 Z98751.3-201ENST00000604447 521 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC067931.1-201ENST00000624190 671 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AL596275.2-204ENST00000641628 552 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AL596275.2-206ENST00000641957 626 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
UBE3DQ7Z6J8 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 181 ms