Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AL845331.3-202ENST00000562856 261 ntBASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AC109446.2-201ENST00000567872 497 ntBASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AC034105.4-201ENST00000568304 277 ntBASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 MIR544B-201ENST00000582372 78 ntBASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AC107214.2-201ENST00000608204 634 ntBASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 MIR7844-201ENST00000616161 122 ntBASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AP000553.6-201ENST00000641242 118 ntBASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
NUP54Q7Z3B4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 MTND4P16-201ENST00000466108 1367 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 RNU6-1027P-201ENST00000383998 107 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 Y_RNA.548-201ENST00000384656 105 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 SOD2P1-201ENST00000396543 562 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AL031577.2-201ENST00000404133 280 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC091862.1-201ENST00000438016 1100 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC108734.1-201ENST00000439549 399 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC234775.1-201ENST00000454247 670 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AL359385.1-201ENST00000456509 365 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 RN7SL542P-201ENST00000467147 294 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 RPL7P23-201ENST00000493874 747 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 OR2A20P-203ENST00000498397 1268 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 SAP18P1-201ENST00000512058 390 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 RNU6-528P-201ENST00000516926 100 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 MTCO1P47-201ENST00000523889 1271 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AP003497.1-201ENST00000528472 562 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC008088.1-201ENST00000580993 280 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 MTCYBP22-201ENST00000603788 447 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AP000254.1-201ENST00000609934 520 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AL392048.1-201ENST00000613946 534 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AL121772.2-201ENST00000614331 297 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AL161637.1-201ENST00000622380 412 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 CR392039.5-201ENST00000623201 510 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AF246928.1-201ENST00000623768 87 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 TPTE2P4-201ENST00000258589 1605 ntBASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.39□□□□□ -1.87
NUP54Q7Z3B4 AL445523.1-201ENST00000451184 1362 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 RNU6-799P-201ENST00000363567 107 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 RNU6-853P-201ENST00000364306 107 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 RNA5SP139-201ENST00000364340 117 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 RNU6-769P-201ENST00000384407 104 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 Y_RNA.560-201ENST00000384689 102 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 MIR135A2-201ENST00000384854 100 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 PTMAP2-201ENST00000397627 327 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 HMGB3P20-201ENST00000417997 600 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 AL035423.1-201ENST00000420331 213 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 AC245054.1-201ENST00000420944 258 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 Z99497.1-201ENST00000421282 135 ntBASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.38□□□□□ -1.87
NUP54Q7Z3B4 BX119904.4-201ENST00000424402 301 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms