Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC017037.1-201ENST00000508460 471 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AC093824.1-201ENST00000508796 343 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AC105914.1-201ENST00000511798 226 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 MYL12AP1-201ENST00000518490 515 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AK6P1-201ENST00000540219 478 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AP001429.1-201ENST00000602568 530 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AL158211.4-201ENST00000606988 584 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AL355073.2-201ENST00000612106 557 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 AL603758.1-201ENST00000618654 241 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 MIR8059-201ENST00000620427 81 ntBASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.06□□□□□ -1.76
PTCHD3Q3KNS1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-1249P-201ENST00000363237 111 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-1322P-201ENST00000364309 107 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 U3.11-201ENST00000364476 212 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 RNA5SP513-201ENST00000364648 118 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-637P-201ENST00000384050 107 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-456P-201ENST00000384493 107 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 SNORA57.1-201ENST00000391227 145 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 FGF7P8-201ENST00000402994 292 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 USP9YP6-201ENST00000413550 854 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC099677.1-201ENST00000420575 175 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 MTCO1P20-201ENST00000425366 358 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 BTF3P10-201ENST00000433415 495 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 RPL23AP46-201ENST00000438548 490 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 FGF7P3-201ENST00000454645 303 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AL049714.1-201ENST00000466686 347 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC092989.1-201ENST00000481235 277 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC020893.1-201ENST00000502452 580 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AL133271.1-201ENST00000538229 291 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AL133153.1-201ENST00000557756 303 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC105224.1-201ENST00000587055 421 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AP000907.4-201ENST00000604143 237 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC007390.2-201ENST00000606229 3803 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC103710.2-201ENST00000609912 942 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 MIR6130-201ENST00000619419 109 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC006065.5-201ENST00000623427 349 ntBASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.05□□□□□ -1.76
PTCHD3Q3KNS1 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 SNORD74.4-201ENST00000364129 80 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 Y_RNA.409-201ENST00000383990 98 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 RNY3P14-201ENST00000384309 102 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 RNU6-780P-201ENST00000391030 104 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 RPS4XP8-201ENST00000402039 771 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 USP9YP27-201ENST00000418455 438 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 AL137014.1-201ENST00000420490 1226 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 AC007283.2-201ENST00000424739 197 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 AL353748.1-201ENST00000440753 474 ntBASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.04□□□□□ -1.76
PTCHD3Q3KNS1 VN1R34P-201ENST00000447387 883 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms