Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH6P52701 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH6P52701 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH6P52701 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.17□□□□□ -1.9
MSH6P52701 AC061975.8-201ENST00000587058 721 ntBASIC3.17□□□□□ -1.9
MSH6P52701 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.17□□□□□ -1.9
MSH6P52701 YWHAQP7-201ENST00000603536 658 ntBASIC3.17□□□□□ -1.9
MSH6P52701 AC067747.1-201ENST00000608026 250 ntBASIC3.17□□□□□ -1.9
MSH6P52701 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.17□□□□□ -1.9
MSH6P52701 AC106730.3-201ENST00000624568 641 ntBASIC3.17□□□□□ -1.9
MSH6P52701 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
MSH6P52701 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.17□□□□□ -1.9
MSH6P52701 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
MSH6P52701 MTND5P3-201ENST00000438536 1800 ntBASIC3.17□□□□□ -1.9
MSH6P52701 AL355578.1-201ENST00000607405 1328 ntBASIC3.17□□□□□ -1.9
MSH6P52701 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
MSH6P52701 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
MSH6P52701 RNA5SP295-201ENST00000362655 121 ntBASIC3.16□□□□□ -1.9
MSH6P52701 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
MSH6P52701 RNU6-932P-201ENST00000391108 106 ntBASIC3.16□□□□□ -1.9
MSH6P52701 AL023284.1-201ENST00000403956 276 ntBASIC3.16□□□□□ -1.9
MSH6P52701 MTCO2P1-201ENST00000424648 477 ntBASIC3.16□□□□□ -1.9
MSH6P52701 RPL36P19-201ENST00000430744 301 ntBASIC3.16□□□□□ -1.9
MSH6P52701 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH6P52701 RPL36AP6-201ENST00000435770 321 ntBASIC3.16□□□□□ -1.9
MSH6P52701 AC018634.1-201ENST00000437554 401 ntBASIC3.16□□□□□ -1.9
MSH6P52701 AC002542.1-201ENST00000440683 193 ntBASIC3.16□□□□□ -1.9
MSH6P52701 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH6P52701 GXYLT1P1-201ENST00000446657 490 ntBASIC3.16□□□□□ -1.9
MSH6P52701 ZNF736P6Y-201ENST00000447526 1213 ntBASIC3.16□□□□□ -1.9
MSH6P52701 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH6P52701 CDC42P1-201ENST00000456658 548 ntBASIC3.16□□□□□ -1.9
MSH6P52701 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.16□□□□□ -1.9
MSH6P52701 VN1R17P-201ENST00000472048 1090 ntBASIC3.16□□□□□ -1.9
MSH6P52701 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
MSH6P52701 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.16□□□□□ -1.9
MSH6P52701 OR6C73P-201ENST00000546432 358 ntBASIC3.16□□□□□ -1.9
MSH6P52701 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
MSH6P52701 AC011611.5-201ENST00000552477 578 ntBASIC3.16□□□□□ -1.9
MSH6P52701 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.16□□□□□ -1.9
MSH6P52701 MIR4504-201ENST00000577413 92 ntBASIC3.16□□□□□ -1.9
MSH6P52701 OR4K7P-201ENST00000580232 945 ntBASIC3.16□□□□□ -1.9
MSH6P52701 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.16□□□□□ -1.9
MSH6P52701 AC011468.4-201ENST00000603942 409 ntBASIC3.16□□□□□ -1.9
MSH6P52701 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
MSH6P52701 Y_RNA.40-201ENST00000362645 93 ntBASIC3.15□□□□□ -1.9
MSH6P52701 SNORA25.6-201ENST00000364121 118 ntBASIC3.15□□□□□ -1.9
MSH6P52701 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.15□□□□□ -1.9
MSH6P52701 MTND4P13-201ENST00000402078 1023 ntBASIC3.15□□□□□ -1.9
MSH6P52701 DEFB130D-201ENST00000426866 237 ntBASIC3.15□□□□□ -1.9
MSH6P52701 OR51AB1P-201ENST00000429046 620 ntBASIC3.15□□□□□ -1.9
MSH6P52701 PSMA2P3-201ENST00000429685 675 ntBASIC3.15□□□□□ -1.9
MSH6P52701 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.15□□□□□ -1.9
MSH6P52701 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.15□□□□□ -1.9
MSH6P52701 RPS26P56-201ENST00000444468 240 ntBASIC3.15□□□□□ -1.9
MSH6P52701 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.15□□□□□ -1.9
MSH6P52701 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.15□□□□□ -1.9
MSH6P52701 RNU6-202P-201ENST00000515998 96 ntBASIC3.15□□□□□ -1.9
MSH6P52701 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.15□□□□□ -1.9
MSH6P52701 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.15□□□□□ -1.9
MSH6P52701 AC068339.2-201ENST00000534395 618 ntBASIC3.15□□□□□ -1.9
MSH6P52701 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.15□□□□□ -1.9
MSH6P52701 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.15□□□□□ -1.9
MSH6P52701 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.15□□□□□ -1.9
MSH6P52701 AC010735.1-201ENST00000567305 1026 ntBASIC3.15□□□□□ -1.9
MSH6P52701 AL020997.3-201ENST00000602843 359 ntBASIC3.15□□□□□ -1.9
MSH6P52701 snoU13.31-201ENST00000607291 104 ntBASIC3.15□□□□□ -1.9
MSH6P52701 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.15□□□□□ -1.9
MSH6P52701 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
MSH6P52701 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
MSH6P52701 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.91
MSH6P52701 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
MSH6P52701 AL157700.1-201ENST00000561973 1432 ntBASIC3.14□□□□□ -1.91
MSH6P52701 RNU6-354P-201ENST00000383862 107 ntBASIC3.14□□□□□ -1.91
MSH6P52701 RNU6-610P-201ENST00000384264 107 ntBASIC3.14□□□□□ -1.91
MSH6P52701 MIR221-201ENST00000385135 110 ntBASIC3.14□□□□□ -1.91
MSH6P52701 SNORA11.4-201ENST00000408823 129 ntBASIC3.14□□□□□ -1.91
MSH6P52701 RNU6-1140P-201ENST00000410517 106 ntBASIC3.14□□□□□ -1.91
MSH6P52701 RPL31P2-201ENST00000413849 377 ntBASIC3.14□□□□□ -1.91
MSH6P52701 SPA17P1-201ENST00000416656 452 ntBASIC3.14□□□□□ -1.91
MSH6P52701 CYCSP49-201ENST00000420810 319 ntBASIC3.14□□□□□ -1.91
MSH6P52701 AC246680.2-201ENST00000422106 389 ntBASIC3.14□□□□□ -1.91
MSH6P52701 CKS1BP5-201ENST00000434172 273 ntBASIC3.14□□□□□ -1.91
MSH6P52701 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.14□□□□□ -1.91
MSH6P52701 RPL21P2-201ENST00000440049 481 ntBASIC3.14□□□□□ -1.91
MSH6P52701 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.14□□□□□ -1.91
MSH6P52701 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.14□□□□□ -1.91
MSH6P52701 AL096829.2-201ENST00000446582 742 ntBASIC3.14□□□□□ -1.91
MSH6P52701 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.14□□□□□ -1.91
MSH6P52701 AC092754.2-201ENST00000463506 460 ntBASIC3.14□□□□□ -1.91
MSH6P52701 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.14□□□□□ -1.91
MSH6P52701 RNA5SP445-201ENST00000515889 115 ntBASIC3.14□□□□□ -1.91
MSH6P52701 RNU6-334P-201ENST00000517072 102 ntBASIC3.14□□□□□ -1.91
MSH6P52701 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
MSH6P52701 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.14□□□□□ -1.91
MSH6P52701 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.14□□□□□ -1.91
MSH6P52701 MTND4LP25-201ENST00000570218 163 ntBASIC3.14□□□□□ -1.91
MSH6P52701 AC005951.1-201ENST00000576706 485 ntBASIC3.14□□□□□ -1.91
MSH6P52701 AC016542.1-201ENST00000608259 493 ntBASIC3.14□□□□□ -1.91
MSH6P52701 AP005229.2-201ENST00000609980 697 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms