Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
LIG3P49916 RN7SKP104-201ENST00000362605 328 ntBASIC5.16□□□□□ -1.58
LIG3P49916 Y_RNA.146-201ENST00000363549 102 ntBASIC5.16□□□□□ -1.58
LIG3P49916 Y_RNA.212-201ENST00000364177 102 ntBASIC5.16□□□□□ -1.58
LIG3P49916 Y_RNA.216-201ENST00000364205 93 ntBASIC5.16□□□□□ -1.58
LIG3P49916 RNA5SP223-201ENST00000365174 120 ntBASIC5.16□□□□□ -1.58
LIG3P49916 RNU6-701P-201ENST00000384059 107 ntBASIC5.16□□□□□ -1.58
LIG3P49916 RNU6-1127P-201ENST00000384580 107 ntBASIC5.16□□□□□ -1.58
LIG3P49916 SNORA11B-201ENST00000408175 129 ntBASIC5.16□□□□□ -1.58
LIG3P49916 RPL7P10-201ENST00000417407 739 ntBASIC5.16□□□□□ -1.58
LIG3P49916 AC099677.1-201ENST00000420575 175 ntBASIC5.16□□□□□ -1.58
LIG3P49916 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.16□□□□□ -1.58
LIG3P49916 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.16□□□□□ -1.58
LIG3P49916 RPL23AP33-201ENST00000442301 452 ntBASIC5.16□□□□□ -1.58
LIG3P49916 FGF7P3-201ENST00000454645 303 ntBASIC5.16□□□□□ -1.58
LIG3P49916 RPL7P43-201ENST00000478876 753 ntBASIC5.16□□□□□ -1.58
LIG3P49916 RPL21P93-201ENST00000480465 489 ntBASIC5.16□□□□□ -1.58
LIG3P49916 AC020890.1-201ENST00000491837 504 ntBASIC5.16□□□□□ -1.58
LIG3P49916 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.16□□□□□ -1.58
LIG3P49916 AC004980.4-201ENST00000513375 203 ntBASIC5.16□□□□□ -1.58
LIG3P49916 RN7SKP147-201ENST00000517154 244 ntBASIC5.16□□□□□ -1.58
LIG3P49916 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.16□□□□□ -1.58
LIG3P49916 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.16□□□□□ -1.58
LIG3P49916 IMMP1LP2-201ENST00000552954 492 ntBASIC5.16□□□□□ -1.58
LIG3P49916 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.16□□□□□ -1.58
LIG3P49916 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
LIG3P49916 SNX18P1Y-201ENST00000616231 511 ntBASIC5.16□□□□□ -1.58
LIG3P49916 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.16□□□□□ -1.58
LIG3P49916 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.16□□□□□ -1.58
LIG3P49916 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LIG3P49916 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
LIG3P49916 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
LIG3P49916 AP000542.2-201ENST00000623199 6179 ntBASIC5.15□□□□□ -1.58
LIG3P49916 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
LIG3P49916 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.15□□□□□ -1.58
LIG3P49916 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
LIG3P49916 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.15□□□□□ -1.58
LIG3P49916 AC107068.1-201ENST00000563286 4218 ntBASIC5.15□□□□□ -1.58
LIG3P49916 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.15□□□□□ -1.58
LIG3P49916 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.15□□□□□ -1.58
LIG3P49916 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.15□□□□□ -1.58
LIG3P49916 RNU6-254P-201ENST00000363377 107 ntBASIC5.15□□□□□ -1.59
LIG3P49916 RNU6-1155P-201ENST00000363554 107 ntBASIC5.15□□□□□ -1.59
LIG3P49916 RNA5SP28-201ENST00000363841 119 ntBASIC5.15□□□□□ -1.59
LIG3P49916 SNORA33.2-201ENST00000365413 134 ntBASIC5.15□□□□□ -1.59
LIG3P49916 MIR135A2-201ENST00000384854 100 ntBASIC5.15□□□□□ -1.59
LIG3P49916 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
LIG3P49916 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
LIG3P49916 RNA5SP219-201ENST00000390940 113 ntBASIC5.15□□□□□ -1.59
LIG3P49916 NDUFS5P1-201ENST00000405668 289 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.15□□□□□ -1.59
LIG3P49916 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.15□□□□□ -1.59
LIG3P49916 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.15□□□□□ -1.59
LIG3P49916 CYCSP43-201ENST00000438233 310 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AL121871.1-201ENST00000443413 436 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG3P49916 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG3P49916 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG3P49916 snoU13.3-201ENST00000459441 104 ntBASIC5.15□□□□□ -1.59
LIG3P49916 RN7SL826P-201ENST00000479724 288 ntBASIC5.15□□□□□ -1.59
LIG3P49916 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.15□□□□□ -1.59
LIG3P49916 AL163540.1-201ENST00000485382 386 ntBASIC5.15□□□□□ -1.59
LIG3P49916 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG3P49916 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG3P49916 RNU6-123P-201ENST00000516163 102 ntBASIC5.15□□□□□ -1.59
LIG3P49916 RNU6-390P-201ENST00000516259 103 ntBASIC5.15□□□□□ -1.59
LIG3P49916 COPS8P3-201ENST00000526024 482 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG3P49916 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG3P49916 AC135001.1-201ENST00000544546 283 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC5.15□□□□□ -1.59
LIG3P49916 AC007151.1-201ENST00000572774 483 ntBASIC5.15□□□□□ -1.59
LIG3P49916 MIR3672-201ENST00000584290 82 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AC023043.2-201ENST00000589678 1026 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AC012669.1-201ENST00000603209 283 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AL670379.4-201ENST00000605279 254 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AC022893.3-201ENST00000607665 437 ntBASIC5.15□□□□□ -1.59
LIG3P49916 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.15□□□□□ -1.59
LIG3P49916 U2.17-201ENST00000611454 95 ntBASIC5.15□□□□□ -1.59
LIG3P49916 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.15□□□□□ -1.59
LIG3P49916 AC007998.5-201ENST00000622938 237 ntBASIC5.15□□□□□ -1.59
LIG3P49916 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
LIG3P49916 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.15□□□□□ -1.59
LIG3P49916 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
LIG3P49916 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
LIG3P49916 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.15□□□□□ -1.59
LIG3P49916 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
LIG3P49916 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.14□□□□□ -1.59
LIG3P49916 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.14□□□□□ -1.59
LIG3P49916 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
LIG3P49916 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIG3P49916 RPL32P3-201ENST00000359025 275 ntBASIC5.14□□□□□ -1.59
LIG3P49916 Y_RNA.187-201ENST00000363918 113 ntBASIC5.14□□□□□ -1.59
LIG3P49916 AL592291.1-201ENST00000403830 352 ntBASIC5.14□□□□□ -1.59
LIG3P49916 RN7SKP114-201ENST00000410327 279 ntBASIC5.14□□□□□ -1.59
LIG3P49916 RPS23P10-201ENST00000416185 486 ntBASIC5.14□□□□□ -1.59
LIG3P49916 DDX39BP1-205ENST00000422507 192 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 160.3 ms