Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 Y_RNA.248-201ENST00000364501 109 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 RNU6-837P-201ENST00000391056 108 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 RNU4-55P-201ENST00000410731 137 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 RAC1P3-201ENST00000416129 580 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 RPL21P109-201ENST00000422213 475 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AC073464.1-201ENST00000429823 534 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 RPL31P35-201ENST00000431058 377 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 USP9YP15-201ENST00000442391 422 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 MTND1P12-201ENST00000455231 147 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AC007182.2-201ENST00000489251 402 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 RAB9BP1-201ENST00000519581 626 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 KC877982.1-201ENST00000602313 470 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AL137849.1-201ENST00000604767 169 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 IGHV3-29-201ENST00000604817 344 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 RNA5SP108-201ENST00000605921 117 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 MIR98-201ENST00000606724 119 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AL590282.1-201ENST00000610379 1136 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AL359880.1-201ENST00000621879 266 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AL356585.4-201ENST00000623078 1229 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AL732618.1-201ENST00000623251 301 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 MIR492-201ENST00000638676 116 ntBASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMCH1Q9UPQ0 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 RNY1P12-201ENST00000364251 105 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 Y_RNA.554-201ENST00000384672 102 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 RNU6-114P-201ENST00000384704 105 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 HSPE1P8-201ENST00000406997 288 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL139415.2-201ENST00000431968 163 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 MRPS18BP2-201ENST00000434310 759 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC104850.1-201ENST00000435940 476 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL451074.3-201ENST00000437709 472 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC093156.1-201ENST00000440382 670 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 NPM1P49-201ENST00000448027 714 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC132479.1-201ENST00000449160 144 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 snoU13.3-201ENST00000459441 104 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 PPIAP15-201ENST00000479662 484 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC107934.1-201ENST00000522215 217 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC134698.4-201ENST00000523451 826 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 FAM92A1P1-201ENST00000528023 890 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL133241.1-201ENST00000556832 487 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 SNORA59B-202ENST00000578183 701 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL031176.1-201ENST00000604554 466 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC009268.2-201ENST00000621925 457 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL157786.1-207ENST00000627771 695 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AC090337.1-201ENST00000579651 2074 ntBASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
LIMCH1Q9UPQ0 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 RNU5E-1-201ENST00000362477 120 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 RNA5SP502-201ENST00000362694 119 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 Y_RNA.372-201ENST00000365599 102 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AL590002.1-201ENST00000406554 418 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 RNU2-62P-201ENST00000410868 191 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AL807761.1-201ENST00000417622 171 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 MTND4LP11-201ENST00000422184 280 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms