Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC008250.2-201ENST00000615261 205 ntBASIC6.06□□□□□ -1.44
COL17A1Q9UMD9 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC6.06□□□□□ -1.44
COL17A1Q9UMD9 AC243312.2-201ENST00000623340 601 ntBASIC6.06□□□□□ -1.44
COL17A1Q9UMD9 AC068880.5-201ENST00000624331 290 ntBASIC6.06□□□□□ -1.44
COL17A1Q9UMD9 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC6.06□□□□□ -1.44
COL17A1Q9UMD9 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
COL17A1Q9UMD9 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 SNORA60-201ENST00000362396 134 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 RNA5SP399-201ENST00000364003 117 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 RNY4P37-201ENST00000516225 96 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC112187.2-201ENST00000604345 283 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC008966.2-201ENST00000606157 453 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 RNU1-30P-201ENST00000606575 163 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC005014.2-201ENST00000607795 599 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC093591.3-201ENST00000634516 308 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 DDX18P4-201ENST00000511690 1966 ntBASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
COL17A1Q9UMD9 AC138915.3-201ENST00000562908 1389 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 Y_RNA.47-201ENST00000362697 108 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 U3.26-201ENST00000391236 204 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RPL23AP29-201ENST00000397284 453 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AL078604.1-201ENST00000404609 466 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 MIR548F4-201ENST00000408515 105 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 SNORA3.3-201ENST00000408712 125 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RNA5SP120-201ENST00000410900 112 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RN7SKP140-201ENST00000411196 284 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AL645937.1-202ENST00000421799 937 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RPL37P21-201ENST00000435890 276 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RPL7P28-201ENST00000437739 740 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RPS7P5-201ENST00000441482 581 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 DCLRE1CP1-201ENST00000454630 470 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RN7SL809P-201ENST00000482040 297 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AL035404.1-201ENST00000497982 568 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 NDUFB4P2-201ENST00000509515 391 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 RNU6-1281P-201ENST00000516223 105 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 OR5AP1P-201ENST00000529730 940 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AC010591.1-201ENST00000603941 649 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AL137849.1-201ENST00000604767 169 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AL390240.1-201ENST00000612950 384 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 AC018926.3-201ENST00000618841 406 ntBASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
COL17A1Q9UMD9 Y_RNA.31-201ENST00000362574 102 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 RNU6-1085P-201ENST00000363576 107 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 MIR1179-201ENST00000408703 91 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 B3GALNT1P1-201ENST00000420569 975 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 MTCYBP8-201ENST00000422855 651 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 NF1P3-201ENST00000457709 450 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 HMGB3P17-201ENST00000504195 649 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 RN7SKP18-201ENST00000516005 275 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 RNU6-513P-201ENST00000516104 104 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 RNU6-885P-201ENST00000516607 104 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 AP002748.2-201ENST00000528671 348 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 AC091516.1-201ENST00000549191 703 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 SCOCP1-201ENST00000554676 349 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 AC093519.1-201ENST00000566109 298 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 PRELID3BP8-201ENST00000604148 295 ntBASIC6.03□□□□□ -1.44
COL17A1Q9UMD9 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms