Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 GABPAP-201ENST00000419271 1356 ntBASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
NKX2-3Q8TAU0 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 HSPA8P14-201ENST00000552265 1805 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 Y_RNA.581-201ENST00000391017 97 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 PRRC2CP1-201ENST00000404428 159 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 RPL23AP38-201ENST00000423801 469 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AC091390.1-201ENST00000433904 331 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 CR769767.1-201ENST00000436337 346 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 RN7SL346P-201ENST00000491561 294 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AC008958.1-201ENST00000511047 682 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 MIR3934-201ENST00000579806 107 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 MIR4273-201ENST00000582824 84 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AC104465.1-201ENST00000611365 139 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 MIR1244-1-201ENST00000612829 85 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AC000123.2-201ENST00000623124 461 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 MIR1244-3-201ENST00000635744 85 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 MIR1244-2-201ENST00000636449 85 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 MIR1244-4-202ENST00000636813 85 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AC097461.1-201ENST00000568928 2821 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AL137141.1-201ENST00000624622 4836 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AL034546.1-201ENST00000623740 3693 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 AL592148.3-201ENST00000608771 2646 ntBASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.41□□□□□ -1.38
NKX2-3Q8TAU0 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AL034549.2-201ENST00000618285 3373 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 Z75746.1-201ENST00000440243 2080 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 BX322639.1-202ENST00000423987 2213 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 Y_RNA.27-201ENST00000362540 103 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 Y_RNA.343-201ENST00000365354 112 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 RNU6-1329P-201ENST00000365664 107 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 Y_RNA.497-201ENST00000384447 98 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 RNA5SP339-201ENST00000390987 122 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 RPS12P5-201ENST00000423449 371 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC108075.1-201ENST00000424692 529 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 BTF3P6-201ENST00000448054 499 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC009963.2-201ENST00000453431 138 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 YWHAEP4-201ENST00000505390 198 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC093815.1-201ENST00000508637 280 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 RNU6ATAC24P-201ENST00000516811 135 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 RN7SKP96-201ENST00000516948 297 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 SCARNA24.2-201ENST00000516968 130 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 RNU6-64P-201ENST00000517119 105 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 RPL10P14-201ENST00000565265 298 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC108738.1-201ENST00000603703 237 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AL022394.1-201ENST00000606979 292 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 uc_338.18-201ENST00000615451 175 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 AC091953.3-201ENST00000623220 236 ntBASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
NKX2-3Q8TAU0 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.4□□□□□ -1.39
NKX2-3Q8TAU0 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
NKX2-3Q8TAU0 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.4□□□□□ -1.39
NKX2-3Q8TAU0 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
NKX2-3Q8TAU0 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
NKX2-3Q8TAU0 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
NKX2-3Q8TAU0 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NKX2-3Q8TAU0 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NKX2-3Q8TAU0 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.39□□□□□ -1.39
NKX2-3Q8TAU0 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
NKX2-3Q8TAU0 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
NKX2-3Q8TAU0 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms