Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 RPL23AP38-201ENST00000423801 469 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AL513175.1-201ENST00000431492 780 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USP43Q70EL4 MTND4LP10-201ENST00000435146 291 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 RPS3AP54-201ENST00000435535 734 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 RPL18AP17-201ENST00000455326 198 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 PMCHL2-203ENST00000457791 237 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
USP43Q70EL4 AP002812.1-201ENST00000495378 474 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AC011352.3-201ENST00000505162 593 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.61□□□□□ -1.83
USP43Q70EL4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.61□□□□□ -1.83
USP43Q70EL4 FGF7P4-201ENST00000509595 295 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.61□□□□□ -1.83
USP43Q70EL4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.61□□□□□ -1.83
USP43Q70EL4 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.61□□□□□ -1.83
USP43Q70EL4 MTCYBP43-201ENST00000513621 740 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.61□□□□□ -1.83
USP43Q70EL4 RNA5SP315-201ENST00000516340 116 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 RNA5SP312-201ENST00000517068 116 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 RNU6-1261P-201ENST00000517194 104 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.61□□□□□ -1.83
USP43Q70EL4 AP001189.2-201ENST00000527320 189 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.61□□□□□ -1.83
USP43Q70EL4 AP002453.2-201ENST00000533503 320 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.61□□□□□ -1.83
USP43Q70EL4 AC006254.3-201ENST00000603353 884 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AL161729.3-201ENST00000603533 673 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AL035413.2-201ENST00000604801 525 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AL451044.1-201ENST00000604867 238 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AC245389.1-201ENST00000605141 529 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AC069304.2-201ENST00000605154 435 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AL359535.1-201ENST00000612100 1087 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 RNVU1-4-201ENST00000612985 164 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
USP43Q70EL4 MIR8059-201ENST00000620427 81 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AC009033.1-201ENST00000624279 431 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 AC138305.3-201ENST00000624988 240 ntBASIC3.61□□□□□ -1.83
USP43Q70EL4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
USP43Q70EL4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.61□□□□□ -1.83
USP43Q70EL4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.61□□□□□ -1.83
USP43Q70EL4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC024560.2-201ENST00000507981 1497 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC046144.1-201ENST00000478559 1853 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USP43Q70EL4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AL645937.1-201ENST00000641739 1652 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 MIR383-201ENST00000362257 73 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 Y_RNA.89-201ENST00000363031 102 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 RNU1-130P-201ENST00000363930 160 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 RN7SKP280-201ENST00000364196 304 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 Y_RNA.402-201ENST00000383972 102 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 Y_RNA.460-201ENST00000384255 102 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
USP43Q70EL4 HLFP1-201ENST00000402375 499 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 RN7SKP285-201ENST00000410137 318 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC069218.2-201ENST00000411665 344 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 RPL21P109-201ENST00000422213 475 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.6□□□□□ -1.83
USP43Q70EL4 OR4F13P-201ENST00000428478 931 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 ZYG11AP1-201ENST00000430329 837 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 UBE2V1P5-201ENST00000440070 405 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC244505.5-201ENST00000443639 207 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 Z95327.1-201ENST00000446082 482 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC006511.1-201ENST00000470614 315 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC015724.1-201ENST00000478577 156 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP43Q70EL4 RPL7P24-201ENST00000493052 752 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.6□□□□□ -1.83
USP43Q70EL4 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.6□□□□□ -1.83
USP43Q70EL4 HMGB1P28-201ENST00000507778 552 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 RN7SKP83-201ENST00000516512 178 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AP002748.2-201ENST00000528671 348 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 OR4A12P-201ENST00000530847 918 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AL389895.1-201ENST00000554127 252 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.6□□□□□ -1.83
USP43Q70EL4 AC034105.4-201ENST00000568304 277 ntBASIC3.6□□□□□ -1.83
USP43Q70EL4 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.6□□□□□ -1.83
USP43Q70EL4 LLPHP1-201ENST00000603571 367 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms