Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 MIR96-201ENST00000362288 78 ntBASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 AL121972.1-201ENST00000402023 252 ntBASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 AC239798.3-201ENST00000454459 408 ntBASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 RNA5SP402-201ENST00000517148 110 ntBASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 COX6CP5-201ENST00000527162 228 ntBASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CSPG4Q6UVK1 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 RNA5SP295-201ENST00000362655 121 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 RNU6-146P-201ENST00000384602 108 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 DNAJC19P6-201ENST00000401853 280 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 U3.37-201ENST00000408528 213 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 RNA5SP38-201ENST00000410750 119 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AL157827.1-201ENST00000447622 132 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 FAM92A1P1-201ENST00000528023 890 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 VIS1.1-201ENST00000610517 203 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC012150.2-201ENST00000621300 544 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 SET-203ENST00000372688 801 ntTSL 2 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 MIR548J-201ENST00000408833 112 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 TRAPPC2P10-201ENST00000415662 323 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 KATNBL1P3-201ENST00000443475 909 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC092754.2-201ENST00000463506 460 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC104986.1-201ENST00000517978 436 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC019176.1-201ENST00000518519 225 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 SNORD53B-201ENST00000577887 78 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC092954.1-201ENST00000609121 445 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AL157834.3-201ENST00000615543 103 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 CKAP2P1-201ENST00000555477 2049 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 MTND5P7-201ENST00000413558 1798 ntBASIC1.45□□□□□ -2.18
CSPG4Q6UVK1 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 RNA5SP138-201ENST00000365098 114 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC025033.1-201ENST00000463883 194 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 GTF2IP9-201ENST00000502460 301 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 HMGB3P15-201ENST00000507326 574 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 RNU1-40P-201ENST00000516816 164 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 RNU1-97P-201ENST00000516872 164 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AL391646.1-201ENST00000603860 190 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC016877.3-201ENST00000606778 504 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC006023.2-201ENST00000609916 167 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 TOMM22P1-201ENST00000418578 312 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC244033.1-201ENST00000426826 870 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AL591704.1-201ENST00000432574 275 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 RPL39P40-201ENST00000445481 146 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AP000852.1-201ENST00000472460 573 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC090255.1-201ENST00000495779 349 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 TBCAP3-201ENST00000512475 312 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 AC002487.1-201ENST00000604565 994 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 Xist_exon1.1-201ENST00000618930 85 ntBASIC1.44□□□□□ -2.18
CSPG4Q6UVK1 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 ZNF876P-202ENST00000398732 1485 ntBASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 USP9YP15-201ENST00000442391 422 ntBASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 AC108734.3-201ENST00000481241 1165 ntBASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 AC104435.1-201ENST00000483483 166 ntBASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 AC006483.1-201ENST00000487308 313 ntBASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 AC034268.2-201ENST00000571784 482 ntBASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 VN1R74P-201ENST00000613259 503 ntBASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.43□□□□□ -2.18
CSPG4Q6UVK1 RNU6-37P-201ENST00000362692 107 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms