Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC011979.1-201ENST00000472300 483 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 RPL21P93-201ENST00000480465 489 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AC233702.1-201ENST00000482905 502 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AC093591.1-201ENST00000491435 481 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 RPL21P16-201ENST00000495531 483 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC1.51□□□□□ -2.17
USF3Q68DE3 AP001542.2-201ENST00000593141 364 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AC116447.1-201ENST00000613153 453 ntBASIC1.51□□□□□ -2.17
USF3Q68DE3 AL109809.4-201ENST00000603520 2185 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.5□□□□□ -2.17
USF3Q68DE3 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC1.5□□□□□ -2.17
USF3Q68DE3 RPL7P37-201ENST00000425095 738 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 HMGN2P19-201ENST00000425149 265 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 OR4K11P-201ENST00000431829 904 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC1.5□□□□□ -2.17
USF3Q68DE3 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
USF3Q68DE3 AC068781.1-201ENST00000488231 618 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 RNA5SP490-201ENST00000517141 136 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 MIR4512-201ENST00000583257 77 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 VN1R84P-201ENST00000593697 235 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 BX248123.2-201ENST00000606318 124 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 AC114546.3-201ENST00000623582 1734 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.5□□□□□ -2.17
USF3Q68DE3 MTND2P16-201ENST00000419987 799 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 Z73417.1-201ENST00000447373 778 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 SSXP1-201ENST00000453640 473 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 BX322784.1-201ENST00000455793 1077 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 AL163540.1-201ENST00000485382 386 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.5□□□□□ -2.17
USF3Q68DE3 MTCO1P30-201ENST00000515244 580 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC1.5□□□□□ -2.17
USF3Q68DE3 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.5□□□□□ -2.17
USF3Q68DE3 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.5□□□□□ -2.17
USF3Q68DE3 APOOP1-201ENST00000604695 592 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 VN1R74P-201ENST00000613259 503 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 AC005156.1-201ENST00000613371 573 ntBASIC1.5□□□□□ -2.17
USF3Q68DE3 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.49□□□□□ -2.17
USF3Q68DE3 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.49□□□□□ -2.17
USF3Q68DE3 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
USF3Q68DE3 RNU1-109P-201ENST00000383960 147 ntBASIC1.49□□□□□ -2.17
USF3Q68DE3 AL645568.3-201ENST00000433683 316 ntBASIC1.49□□□□□ -2.17
USF3Q68DE3 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC1.49□□□□□ -2.17
USF3Q68DE3 USP9YP15-201ENST00000442391 422 ntBASIC1.49□□□□□ -2.17
USF3Q68DE3 CLIC4P1-201ENST00000453177 535 ntBASIC1.49□□□□□ -2.17
USF3Q68DE3 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC1.49□□□□□ -2.17
USF3Q68DE3 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.49□□□□□ -2.17
USF3Q68DE3 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
USF3Q68DE3 AL035411.2-201ENST00000604022 421 ntBASIC1.49□□□□□ -2.17
USF3Q68DE3 MIR6895-201ENST00000613497 78 ntBASIC1.49□□□□□ -2.17
USF3Q68DE3 AC010678.1-201ENST00000614118 713 ntBASIC1.49□□□□□ -2.17
USF3Q68DE3 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
USF3Q68DE3 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.48□□□□□ -2.17
USF3Q68DE3 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
USF3Q68DE3 Y_RNA.122-201ENST00000363331 96 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AP000275.1-201ENST00000411943 390 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC109780.2-201ENST00000413467 845 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 EIF1AXP1-201ENST00000419267 435 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 NAP1L4P3-201ENST00000432820 1147 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC1.48□□□□□ -2.17
USF3Q68DE3 RPL37P25-201ENST00000507308 276 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC109471.1-201ENST00000511631 612 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.48□□□□□ -2.17
USF3Q68DE3 CBX3P4-201ENST00000538909 354 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 NOP56P3-201ENST00000549457 385 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
USF3Q68DE3 AL049838.1-201ENST00000563647 981 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC010546.1-201ENST00000569391 485 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 MIR4419B-201ENST00000577260 68 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 MIR4446-201ENST00000578505 67 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 SNORA4-201ENST00000584302 138 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC012360.2-201ENST00000609349 391 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
USF3Q68DE3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.48□□□□□ -2.17
USF3Q68DE3 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.48□□□□□ -2.17
USF3Q68DE3 RNA5SP393-201ENST00000363423 117 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AL627390.1-201ENST00000396055 340 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.48□□□□□ -2.17
USF3Q68DE3 TOMM22P1-201ENST00000418578 312 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AL358453.1-201ENST00000422522 250 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.48□□□□□ -2.17
USF3Q68DE3 TPT1P14-201ENST00000448018 505 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 RPS15AP1-201ENST00000457423 391 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.48□□□□□ -2.17
USF3Q68DE3 AL121839.1-201ENST00000556233 1185 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.48□□□□□ -2.17
USF3Q68DE3 AP005136.1-201ENST00000579765 429 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC1.48□□□□□ -2.17
USF3Q68DE3 AL590099.1-201ENST00000615276 138 ntBASIC1.48□□□□□ -2.17
USF3Q68DE3 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.48□□□□□ -2.17
USF3Q68DE3 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.48□□□□□ -2.17
USF3Q68DE3 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
USF3Q68DE3 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms