Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC1.7□□□□□ -2.14
FOXA3P55318 SUMO2P14-201ENST00000604488 293 ntBASIC1.7□□□□□ -2.14
FOXA3P55318 AC004775.1-201ENST00000607389 753 ntBASIC1.7□□□□□ -2.14
FOXA3P55318 AP004247.3-201ENST00000608682 624 ntBASIC1.7□□□□□ -2.14
FOXA3P55318 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXA3P55318 ZNF658B-202ENST00000615961 3375 ntBASIC1.7□□□□□ -2.14
FOXA3P55318 MIR6766-201ENST00000622641 72 ntBASIC1.7□□□□□ -2.14
FOXA3P55318 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXA3P55318 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXA3P55318 AL365361.1-201ENST00000566942 3481 ntBASIC1.7□□□□□ -2.14
FOXA3P55318 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.7□□□□□ -2.14
FOXA3P55318 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXA3P55318 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
FOXA3P55318 TPTE2P4-201ENST00000258589 1605 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
FOXA3P55318 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.69□□□□□ -2.14
FOXA3P55318 RNU6-859P-201ENST00000362728 107 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 RNU6-444P-201ENST00000383988 108 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 SNORA48.3-201ENST00000391081 134 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AL139039.1-201ENST00000401900 692 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXA3P55318 RN7SKP140-201ENST00000411196 284 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXA3P55318 AL358075.3-201ENST00000426289 226 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA3P55318 SRIP2-201ENST00000428470 166 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA3P55318 AC004866.2-201ENST00000438285 481 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 GPM6BP3-201ENST00000442797 145 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA3P55318 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC1.69□□□□□ -2.14
FOXA3P55318 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC1.69□□□□□ -2.14
FOXA3P55318 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
FOXA3P55318 PNPLA4P1-201ENST00000458328 305 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AC097493.1-201ENST00000463958 372 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA3P55318 AC008676.3-201ENST00000521237 435 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AC022616.2-201ENST00000523185 300 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC1.69□□□□□ -2.14
FOXA3P55318 AC090888.1-201ENST00000561335 1141 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 MIR4325-201ENST00000583049 90 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 MIR5002-201ENST00000584713 97 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXA3P55318 AC002487.1-201ENST00000604565 994 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AP005137.2-201ENST00000609238 400 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AC005332.10-201ENST00000612725 619 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXA3P55318 AC079395.3-201ENST00000615161 484 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC1.69□□□□□ -2.14
FOXA3P55318 AL356118.1-201ENST00000635272 1078 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 AL109809.4-201ENST00000603520 2185 ntBASIC1.69□□□□□ -2.14
FOXA3P55318 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
FOXA3P55318 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC1.68□□□□□ -2.14
FOXA3P55318 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA3P55318 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA3P55318 RNA5SP138-201ENST00000365098 114 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AP002784.2-201ENST00000397300 549 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 RNA5SP338-201ENST00000410495 85 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 HMGB3P31-201ENST00000413333 595 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 UBE2V1P9-201ENST00000414760 368 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA3P55318 AC092017.2-201ENST00000427600 362 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC044797.1-201ENST00000445744 679 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC068135.1-201ENST00000446164 246 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 NANOGNBP1-201ENST00000448444 480 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA3P55318 SNORD109B-201ENST00000458961 67 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 SNORD109A-201ENST00000459128 67 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC090515.1-201ENST00000465295 476 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC022493.1-201ENST00000492984 337 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA3P55318 RNU1-40P-201ENST00000516816 164 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 RNU1-97P-201ENST00000516872 164 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 RNU4ATAC10P-201ENST00000516967 122 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC1.68□□□□□ -2.14
FOXA3P55318 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC1.68□□□□□ -2.14
FOXA3P55318 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA3P55318 AL138976.2-201ENST00000563989 694 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AGGF1P5-201ENST00000567900 919 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.68□□□□□ -2.14
FOXA3P55318 VN1R90P-201ENST00000595717 726 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.68□□□□□ -2.14
FOXA3P55318 AC007619.2-201ENST00000605743 379 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AL449363.1-201ENST00000617815 186 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AL109659.3-201ENST00000624985 950 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC093591.3-201ENST00000634516 308 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
FOXA3P55318 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA3P55318 ZNF90P1-201ENST00000480493 1951 ntBASIC1.68□□□□□ -2.14
FOXA3P55318 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
FOXA3P55318 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.67□□□□□ -2.14
FOXA3P55318 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC1.67□□□□□ -2.14
FOXA3P55318 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC1.67□□□□□ -2.14
FOXA3P55318 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
FOXA3P55318 RNU6-1151P-201ENST00000384684 107 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 MIR518C-201ENST00000384822 101 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
FOXA3P55318 SNORA48.7-201ENST00000391302 135 ntBASIC1.67□□□□□ -2.14
FOXA3P55318 SNORD23.1-201ENST00000408212 104 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms