Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SOX3P41225 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX3P41225 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SOX3P41225 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.21□□□□□ -1.89
SOX3P41225 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
SOX3P41225 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
SOX3P41225 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.21□□□□□ -1.89
SOX3P41225 AL049780.3-201ENST00000624612 1583 ntBASIC3.21□□□□□ -1.89
SOX3P41225 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX3P41225 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX3P41225 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX3P41225 AC092447.10-201ENST00000620607 1652 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX3P41225 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
SOX3P41225 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.21□□□□□ -1.9
SOX3P41225 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX3P41225 RNU1-75P-201ENST00000347264 129 ntBASIC3.21□□□□□ -1.9
SOX3P41225 MIR208A-201ENST00000362287 71 ntBASIC3.21□□□□□ -1.9
SOX3P41225 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 SNORD116-9-201ENST00000384000 95 ntBASIC3.21□□□□□ -1.9
SOX3P41225 SNORD116-3-201ENST00000384287 95 ntBASIC3.21□□□□□ -1.9
SOX3P41225 SNORD116-7-201ENST00000384404 95 ntBASIC3.21□□□□□ -1.9
SOX3P41225 SNORD116-5-201ENST00000384462 95 ntBASIC3.21□□□□□ -1.9
SOX3P41225 MT-TH-201ENST00000387441 69 ntBASIC3.21□□□□□ -1.9
SOX3P41225 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
SOX3P41225 SNORD17-201ENST00000390930 237 ntBASIC3.21□□□□□ -1.9
SOX3P41225 MTCO1P17-201ENST00000411522 491 ntBASIC3.21□□□□□ -1.9
SOX3P41225 RPS7P15-201ENST00000415804 584 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC017079.2-201ENST00000416102 485 ntBASIC3.21□□□□□ -1.9
SOX3P41225 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX3P41225 AL513174.1-201ENST00000423182 629 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 AC006946.1-201ENST00000429106 328 ntBASIC3.21□□□□□ -1.9
SOX3P41225 MED14P1-201ENST00000430517 648 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AL365184.2-201ENST00000431139 435 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC098826.1-201ENST00000433943 471 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 RSU1P2-202ENST00000437884 485 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX3P41225 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 RPL36AP33-201ENST00000450395 310 ntBASIC3.21□□□□□ -1.9
SOX3P41225 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.21□□□□□ -1.9
SOX3P41225 HMGB3P30-201ENST00000457863 606 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC092754.2-201ENST00000463506 460 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC091153.1-201ENST00000466297 402 ntBASIC3.21□□□□□ -1.9
SOX3P41225 ST13P14-201ENST00000474095 734 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC078817.1-201ENST00000492623 435 ntBASIC3.21□□□□□ -1.9
SOX3P41225 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 RNU2-27P-201ENST00000516185 142 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.21□□□□□ -1.9
SOX3P41225 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX3P41225 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.21□□□□□ -1.9
SOX3P41225 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
SOX3P41225 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.21□□□□□ -1.9
SOX3P41225 SRGNP1-201ENST00000603392 451 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AL590229.1-201ENST00000603497 542 ntBASIC3.21□□□□□ -1.9
SOX3P41225 BCRP9-201ENST00000605312 388 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC092354.1-201ENST00000606057 376 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AC103710.4-201ENST00000609301 899 ntBASIC3.21□□□□□ -1.9
SOX3P41225 AL355365.1-201ENST00000616480 294 ntBASIC3.21□□□□□ -1.9
SOX3P41225 MIR7975-201ENST00000619350 68 ntBASIC3.21□□□□□ -1.9
SOX3P41225 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX3P41225 ELL2P3-201ENST00000457883 1602 ntBASIC3.21□□□□□ -1.9
SOX3P41225 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.21□□□□□ -1.9
SOX3P41225 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX3P41225 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SOX3P41225 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.21□□□□□ -1.9
SOX3P41225 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 AC004972.1-201ENST00000623934 2209 ntBASIC3.2□□□□□ -1.9
SOX3P41225 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SOX3P41225 Y_RNA.234-201ENST00000364409 97 ntBASIC3.2□□□□□ -1.9
SOX3P41225 RNA5SP72-201ENST00000364442 117 ntBASIC3.2□□□□□ -1.9
SOX3P41225 RNU6-359P-201ENST00000365466 108 ntBASIC3.2□□□□□ -1.9
SOX3P41225 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 RNU6-769P-201ENST00000384407 104 ntBASIC3.2□□□□□ -1.9
SOX3P41225 RNU6-328P-201ENST00000390887 106 ntBASIC3.2□□□□□ -1.9
SOX3P41225 NPM1P11-201ENST00000417106 855 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AL365338.1-201ENST00000422282 858 ntBASIC3.2□□□□□ -1.9
SOX3P41225 RPS27AP14-201ENST00000422868 454 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 AP000907.1-201ENST00000428428 510 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.2□□□□□ -1.9
SOX3P41225 MTND4LP10-201ENST00000435146 291 ntBASIC3.2□□□□□ -1.9
SOX3P41225 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.2□□□□□ -1.9
SOX3P41225 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
SOX3P41225 AP000542.1-201ENST00000448473 371 ntBASIC3.2□□□□□ -1.9
SOX3P41225 OR6K1P-201ENST00000456766 971 ntBASIC3.2□□□□□ -1.9
SOX3P41225 CEACAMP4-201ENST00000457676 421 ntBASIC3.2□□□□□ -1.9
SOX3P41225 snoU13.8-201ENST00000458890 104 ntBASIC3.2□□□□□ -1.9
SOX3P41225 RPL23AP62-201ENST00000463396 453 ntBASIC3.2□□□□□ -1.9
SOX3P41225 RPL21P10-201ENST00000463521 490 ntBASIC3.2□□□□□ -1.9
SOX3P41225 AP000873.1-201ENST00000463987 400 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms