Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
SHMT2P34897 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SHMT2P34897 DEFB109C-201ENST00000382575 264 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 DEFB109B-201ENST00000382656 264 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 RNU1-101P-201ENST00000391171 127 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 RNA5SP80-201ENST00000410475 111 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 EEF1A1P41-201ENST00000414667 207 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 RPL7P30-201ENST00000420888 709 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 DUTP6-201ENST00000425573 462 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 MTND4LP10-201ENST00000435146 291 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 SDR42E1P3-201ENST00000438345 502 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 OR10R1P-201ENST00000441524 1141 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 AC011979.1-201ENST00000472300 483 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.84□□□□□ -1.95
SHMT2P34897 AC114322.1-201ENST00000506771 926 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 AC119751.4-201ENST00000507498 357 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 AC006390.1-201ENST00000508068 283 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.84□□□□□ -1.95
SHMT2P34897 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC2.84□□□□□ -1.95
SHMT2P34897 AC008837.2-201ENST00000513076 418 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.84□□□□□ -1.95
SHMT2P34897 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.84□□□□□ -1.95
SHMT2P34897 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.84□□□□□ -1.95
SHMT2P34897 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC2.84□□□□□ -1.95
SHMT2P34897 AC005832.3-201ENST00000537929 631 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.84□□□□□ -1.95
SHMT2P34897 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.84□□□□□ -1.95
SHMT2P34897 AADACP1-206ENST00000561502 1193 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.84□□□□□ -1.95
SHMT2P34897 MIR4637-201ENST00000582405 84 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 AC015871.2-201ENST00000603605 948 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 AL160237.3-201ENST00000604114 1013 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.84□□□□□ -1.95
SHMT2P34897 AC107871.2-201ENST00000612894 502 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SHMT2P34897 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.84□□□□□ -1.95
SHMT2P34897 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.84□□□□□ -1.95
SHMT2P34897 AC010608.3-201ENST00000625048 527 ntBASIC2.84□□□□□ -1.95
SHMT2P34897 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.84□□□□□ -1.95
SHMT2P34897 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
SHMT2P34897 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.84□□□□□ -1.96
SHMT2P34897 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.83□□□□□ -1.96
SHMT2P34897 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
SHMT2P34897 AC108206.1-201ENST00000570186 4159 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 ZNF807-201ENST00000328088 1707 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RNU6-1074P-201ENST00000383995 104 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 CYCSP45-201ENST00000402289 315 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AL590084.1-201ENST00000407885 387 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RNA5SP129-201ENST00000410276 118 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RNU4-22P-201ENST00000411058 166 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RPL7P8-201ENST00000411964 730 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AL451074.5-201ENST00000415894 435 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 MTND2P5-201ENST00000432656 1006 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RPL23AP74-201ENST00000437246 471 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
SHMT2P34897 EXOSC3P1-201ENST00000448649 500 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AL162389.1-201ENST00000449233 177 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RPL36AP33-201ENST00000450395 310 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 Z82190.1-201ENST00000454534 490 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SHMT2P34897 RPS3AP14-201ENST00000483907 780 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AC080014.1-201ENST00000496877 1201 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.83□□□□□ -1.96
SHMT2P34897 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.83□□□□□ -1.96
SHMT2P34897 TMEM251P1-201ENST00000503717 318 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC2.83□□□□□ -1.96
SHMT2P34897 HMGB1P28-201ENST00000507778 552 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AC010625.1-201ENST00000511296 403 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RNU1-61P-201ENST00000516107 151 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RNU6-1095P-201ENST00000516148 108 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 RNA5SP468-201ENST00000516782 93 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.83□□□□□ -1.96
SHMT2P34897 FAM60DP-201ENST00000524174 632 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.83□□□□□ -1.96
SHMT2P34897 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC2.83□□□□□ -1.96
SHMT2P34897 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.83□□□□□ -1.96
SHMT2P34897 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.83□□□□□ -1.96
SHMT2P34897 HSPE1P3-201ENST00000559254 309 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AL132657.2-201ENST00000564417 358 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
SHMT2P34897 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.83□□□□□ -1.96
SHMT2P34897 AL627309.6-201ENST00000606857 840 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AC025588.4-201ENST00000615802 908 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AP002907.1-201ENST00000606361 1430 ntBASIC2.83□□□□□ -1.96
SHMT2P34897 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SHMT2P34897 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.82□□□□□ -1.96
SHMT2P34897 RPS3AP37-201ENST00000419176 745 ntBASIC2.82□□□□□ -1.96
SHMT2P34897 YPEL5P1-201ENST00000419731 367 ntBASIC2.82□□□□□ -1.96
SHMT2P34897 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.82□□□□□ -1.96
SHMT2P34897 AC104332.2-201ENST00000429959 156 ntBASIC2.82□□□□□ -1.96
SHMT2P34897 AL139132.1-201ENST00000431587 344 ntBASIC2.82□□□□□ -1.96
SHMT2P34897 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
SHMT2P34897 AL031313.1-201ENST00000448435 256 ntBASIC2.82□□□□□ -1.96
SHMT2P34897 AC005297.2-201ENST00000450430 606 ntBASIC2.82□□□□□ -1.96
SHMT2P34897 OFD1P3Y-201ENST00000453312 783 ntBASIC2.82□□□□□ -1.96
SHMT2P34897 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.82□□□□□ -1.96
SHMT2P34897 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.82□□□□□ -1.96
SHMT2P34897 RPS26P21-201ENST00000475397 348 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms