Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL158209.2-201ENST00000619266 216 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 AL354798.1-201ENST00000622505 329 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 AL732618.1-201ENST00000623251 301 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SMARCA1P28370 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SMARCA1P28370 AL161912.2-201ENST00000565707 3007 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 UBE3AP2-201ENST00000429033 2259 ntBASIC4.52□□□□□ -1.69
SMARCA1P28370 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
SMARCA1P28370 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.51□□□□□ -1.69
SMARCA1P28370 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 OR5J1P-201ENST00000313544 939 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 U1.1-201ENST00000384101 164 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 RNU6-821P-201ENST00000390995 107 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AL445189.1-201ENST00000405722 338 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 GSTA9P-201ENST00000406231 611 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.51□□□□□ -1.69
SMARCA1P28370 ISCA1P1-201ENST00000426679 387 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 MRPS10P2-201ENST00000431226 381 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 RPL7P28-201ENST00000437739 740 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.51□□□□□ -1.69
SMARCA1P28370 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.51□□□□□ -1.69
SMARCA1P28370 AL049734.2-201ENST00000441066 616 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.51□□□□□ -1.69
SMARCA1P28370 HMGN2P21-201ENST00000447764 270 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AC003071.1-201ENST00000451219 789 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AC104308.1-201ENST00000454621 333 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.51□□□□□ -1.69
SMARCA1P28370 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.51□□□□□ -1.69
SMARCA1P28370 RBM43P1-201ENST00000476891 1081 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AC021382.1-201ENST00000483523 359 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 AC114967.1-201ENST00000504890 259 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.51□□□□□ -1.69
SMARCA1P28370 ZNF519P2-201ENST00000557032 169 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AL391840.1-201ENST00000571144 367 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.51□□□□□ -1.69
SMARCA1P28370 AC092954.2-201ENST00000609103 430 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.51□□□□□ -1.69
SMARCA1P28370 AC006329.2-201ENST00000611491 394 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.51□□□□□ -1.69
SMARCA1P28370 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 AC009268.2-201ENST00000621925 457 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.51□□□□□ -1.69
SMARCA1P28370 AL157786.1-207ENST00000627771 695 ntBASIC4.51□□□□□ -1.69
SMARCA1P28370 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
SMARCA1P28370 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SMARCA1P28370 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.5□□□□□ -1.69
SMARCA1P28370 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.5□□□□□ -1.69
SMARCA1P28370 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SMARCA1P28370 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SMARCA1P28370 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.5□□□□□ -1.69
SMARCA1P28370 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SMARCA1P28370 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SMARCA1P28370 RNU6-263P-201ENST00000363811 107 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 SNORD74.4-201ENST00000364129 80 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 Y_RNA.296-201ENST00000364930 108 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 RNU1-64P-201ENST00000365443 163 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 RNU6-359P-201ENST00000365466 108 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SMARCA1P28370 RNA5SP306-201ENST00000411087 107 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 JKAMPP1-201ENST00000413804 919 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 AC244098.2-201ENST00000422068 99 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 AL139415.2-201ENST00000431968 163 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.5□□□□□ -1.69
SMARCA1P28370 AL451074.3-201ENST00000437709 472 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 MTCO3P20-201ENST00000454926 688 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 PPIAP15-201ENST00000479662 484 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 KCTD9P5-201ENST00000504141 1170 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.5□□□□□ -1.69
SMARCA1P28370 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.5□□□□□ -1.69
SMARCA1P28370 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.5□□□□□ -1.69
SMARCA1P28370 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.5□□□□□ -1.69
SMARCA1P28370 RNU6-718P-201ENST00000516166 105 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 RNA5SP164-201ENST00000516533 110 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 MTCYBP41-201ENST00000528913 1123 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.5□□□□□ -1.69
SMARCA1P28370 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.5□□□□□ -1.69
SMARCA1P28370 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SMARCA1P28370 AL356432.3-201ENST00000568952 465 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.5□□□□□ -1.69
SMARCA1P28370 AC011468.4-201ENST00000603942 409 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 HMGN2P28-201ENST00000606102 262 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 BX664608.1-201ENST00000610519 487 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.5□□□□□ -1.69
SMARCA1P28370 AC091953.2-201ENST00000623979 160 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 CR381653.2-201ENST00000624041 768 ntBASIC4.5□□□□□ -1.69
SMARCA1P28370 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SMARCA1P28370 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SMARCA1P28370 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
SMARCA1P28370 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SMARCA1P28370 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SMARCA1P28370 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms