Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNU2-58P-201ENST00000516403 183 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 RNU6-835P-201ENST00000516974 104 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 IFITM8P-201ENST00000522529 394 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A1P12109 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.88□□□□□ -1.63
COL6A1P12109 AC011611.1-201ENST00000552179 197 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AL121821.2-201ENST00000556081 394 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.88□□□□□ -1.63
COL6A1P12109 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.88□□□□□ -1.63
COL6A1P12109 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.88□□□□□ -1.63
COL6A1P12109 AC022432.1-201ENST00000595739 310 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AC243960.4-201ENST00000600532 288 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AC007687.1-201ENST00000602704 304 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 BPIFA4P-203ENST00000603168 689 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AC004825.2-201ENST00000616634 455 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AC019278.1-201ENST00000623516 479 ntBASIC4.88□□□□□ -1.63
COL6A1P12109 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL6A1P12109 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A1P12109 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A1P12109 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
COL6A1P12109 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL6A1P12109 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A1P12109 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A1P12109 ZNF734P-201ENST00000419494 1534 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A1P12109 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A1P12109 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A1P12109 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A1P12109 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A1P12109 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A1P12109 RNU5E-1-201ENST00000362477 120 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 RNY1P12-201ENST00000364251 105 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 RNU6-853P-201ENST00000364306 107 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 SNORA69-201ENST00000383895 132 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 SNORA20.2-201ENST00000383922 131 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 SNORA9-201ENST00000384215 133 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL6A1P12109 AL023807.1-201ENST00000407932 359 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A1P12109 PDCL2P1-201ENST00000419302 352 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.87□□□□□ -1.63
COL6A1P12109 YME1L1P1-201ENST00000429435 297 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC119618.1-201ENST00000434191 222 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC114495.1-201ENST00000441274 436 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.87□□□□□ -1.63
COL6A1P12109 RPL7P12-201ENST00000446719 750 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 AL500522.2-201ENST00000448562 343 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC020890.1-201ENST00000491837 504 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A1P12109 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC023141.12-201ENST00000512399 199 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.87□□□□□ -1.63
COL6A1P12109 SCARNA13-201ENST00000516672 275 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 RN7SKP116-201ENST00000516902 319 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A1P12109 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.87□□□□□ -1.63
COL6A1P12109 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.87□□□□□ -1.63
COL6A1P12109 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.87□□□□□ -1.63
COL6A1P12109 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.87□□□□□ -1.63
COL6A1P12109 AP001429.1-201ENST00000602568 530 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A1P12109 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A1P12109 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A1P12109 AL133243.3-201ENST00000617415 3004 ntBASIC4.87□□□□□ -1.63
COL6A1P12109 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.87□□□□□ -1.63
COL6A1P12109 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL6A1P12109 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL6A1P12109 AL645937.1-201ENST00000641739 1652 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL6A1P12109 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.86□□□□□ -1.63
COL6A1P12109 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
COL6A1P12109 AP000542.2-201ENST00000623199 6179 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL6A1P12109 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL6A1P12109 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL6A1P12109 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A1P12109 AL583835.1-201ENST00000399570 407 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 RPL23AP48-201ENST00000406913 488 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A1P12109 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.86□□□□□ -1.63
COL6A1P12109 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A1P12109 SAR1AP4-201ENST00000429225 591 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 COX6B1P7-201ENST00000430845 235 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A1P12109 ATP5JP1-201ENST00000431631 322 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 AL606489.2-201ENST00000433886 234 ntBASIC4.86□□□□□ -1.63
COL6A1P12109 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms