Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MTCYBP43-201ENST00000513621 740 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 RN7SKP116-201ENST00000516902 319 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 DEFB131D-201ENST00000526803 184 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HOXD4P09016 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXD4P09016 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXD4P09016 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD4P09016 AC243773.3-201ENST00000613270 256 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXD4P09016 Z69908.1-201ENST00000622603 247 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC079228.1-201ENST00000624774 1049 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC092192.1-201ENST00000633154 1018 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 AC099063.3-201ENST00000642066 185 ntBASIC3.16□□□□□ -1.9
HOXD4P09016 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.15□□□□□ -1.9
HOXD4P09016 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXD4P09016 GABPAP-201ENST00000419271 1356 ntBASIC3.15□□□□□ -1.9
HOXD4P09016 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HOXD4P09016 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
HOXD4P09016 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 RPL21P132-201ENST00000331267 462 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 MIR30E-201ENST00000362104 92 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 MIR148B-201ENST00000362252 99 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 RNU6-660P-201ENST00000364566 109 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 DYNLT3P1-201ENST00000378574 347 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 MIR591-201ENST00000385290 95 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 RNU6-837P-201ENST00000391056 108 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AL583834.1-201ENST00000406943 343 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AL023807.1-201ENST00000407932 359 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 RNA5SP31-201ENST00000411144 127 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD4P09016 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 NPM1P11-201ENST00000417106 855 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 MORF4L1P6-201ENST00000418771 268 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD4P09016 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD4P09016 AL158071.1-201ENST00000430315 461 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 ATP5JP1-201ENST00000431631 322 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AC129850.1-201ENST00000436203 508 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 MTCYBP39-201ENST00000437562 491 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXD4P09016 RPL23AP16-201ENST00000441715 421 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD4P09016 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 USP9YP10-201ENST00000454868 628 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 RPS4XP2-201ENST00000458402 793 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 U3.44-201ENST00000458938 192 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 RN7SL594P-201ENST00000470590 287 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD4P09016 AC093663.1-201ENST00000497190 394 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 OR2A20P-203ENST00000498397 1268 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 MTND5P13-201ENST00000513046 1079 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AC006499.2-201ENST00000513470 337 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.15□□□□□ -1.91
HOXD4P09016 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD4P09016 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 ZNF705CP-201ENST00000530515 889 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AP003385.6-201ENST00000531603 374 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD4P09016 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD4P09016 AC107954.1-201ENST00000565906 727 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD4P09016 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD4P09016 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD4P09016 MTCYBP33-201ENST00000575007 1130 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 LARP7P2-201ENST00000575306 125 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 KLKP1-201ENST00000595979 403 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AP001981.2-201ENST00000603241 418 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AL596327.1-201ENST00000603629 213 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 YPEL5P2-201ENST00000605553 359 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AL513477.2-201ENST00000607858 568 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD4P09016 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD4P09016 MIR8057-201ENST00000620957 69 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 AC231657.1-201ENST00000624313 397 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 SCARNA15.3-201ENST00000626315 122 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.15□□□□□ -1.91
HOXD4P09016 SCARNA4.1-201ENST00000628597 123 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 AC118273.1-201ENST00000525324 3006 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 PWAR6-201ENST00000552334 4618 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
HOXD4P09016 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD4P09016 ZNF833P-201ENST00000424938 1494 ntBASIC3.15□□□□□ -1.91
HOXD4P09016 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD4P09016 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
HOXD4P09016 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms