Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AL731532.2-201ENST00000623542 1953 ntBASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.18□□□□□ -1.42
VPS9D1Q9Y2B5 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-899P-201ENST00000363947 107 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 RN7SKP78-201ENST00000364711 318 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 SNORA64.3-201ENST00000365647 134 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 LAP3P1-201ENST00000403648 294 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 OR3A2-201ENST00000408891 1076 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 SNORD12B-201ENST00000410433 91 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 SNORD56-201ENST00000413522 71 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 HMGB1P27-201ENST00000431429 603 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 AC234771.2-201ENST00000445718 597 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 RPL21P6-201ENST00000479171 504 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 HMGB3P16-201ENST00000508037 287 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 RN7SKP272-201ENST00000516988 232 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 AC116917.1-201ENST00000520558 305 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 AC089999.3-201ENST00000622440 577 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01613-201ENST00000561476 2780 ntBASIC6.17□□□□□ -1.42
VPS9D1Q9Y2B5 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AC015799.1-201ENST00000622996 3122 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-199P-201ENST00000362954 107 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 Y_RNA.123-201ENST00000363338 102 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-626P-201ENST00000363354 107 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RNA5SP346-201ENST00000363541 121 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-263P-201ENST00000363811 107 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RNU4-17P-201ENST00000365598 141 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 SNORA70.9-201ENST00000384370 135 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 MIR191-201ENST00000384873 92 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AL121835.1-201ENST00000404250 354 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 SNORA11.5-201ENST00000408163 128 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 MTATP6P7-201ENST00000453315 681 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 snoU13.30-201ENST00000458951 104 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RN7SL352P-201ENST00000466002 277 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AC092865.4-201ENST00000477936 615 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RPS15AP34-201ENST00000487776 387 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AC090958.1-201ENST00000511122 351 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 IGLVIV-53-201ENST00000520107 367 ntBASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS9D1Q9Y2B5 AC008758.3-201ENST00000507003 1829 ntBASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-843P-201ENST00000384454 104 ntBASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 Y_RNA.534-201ENST00000384599 112 ntBASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 RNU6-376P-201ENST00000384731 106 ntBASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 RPL23AP17-201ENST00000401064 499 ntBASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 AC234781.4-201ENST00000419384 244 ntBASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 RPS20P1-201ENST00000434853 354 ntBASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 AC112187.1-201ENST00000455837 479 ntBASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.15□□□□□ -1.42
VPS9D1Q9Y2B5 SNORA40.9-201ENST00000515895 93 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms