Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RAC1P7-201ENST00000445367 377 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 RSL24D1P3-201ENST00000449255 495 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 RN7SL594P-201ENST00000470590 287 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC034244.1-201ENST00000507687 207 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC024589.1-201ENST00000512207 263 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC017037.2-201ENST00000513850 890 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 RNA5SP385-201ENST00000515947 110 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 SNORA31.26-201ENST00000517250 137 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 MIR4506-201ENST00000584693 77 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 MIR4760-201ENST00000585040 80 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC011451.2-201ENST00000604303 598 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC006077.1-201ENST00000604746 343 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC025588.2-201ENST00000604851 466 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC007179.3-201ENST00000604976 235 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AL160281.1-201ENST00000605307 311 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AL590099.1-201ENST00000615276 138 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC068831.7-201ENST00000616954 363 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC002550.2-201ENST00000621246 394 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC007823.1-201ENST00000569932 1566 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 SNORA4.1-201ENST00000364263 144 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 RNU6-359P-201ENST00000365466 108 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC007066.1-201ENST00000392902 381 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 RNU2-43P-201ENST00000410306 190 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AL008987.1-201ENST00000415528 237 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 CCDC58P2-201ENST00000417131 366 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 SSXP9-201ENST00000417503 292 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 TXNL1P1-201ENST00000429528 554 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 HMGN2P31-201ENST00000432430 273 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 EEF1E1P1-201ENST00000446998 430 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 MTND1P31-201ENST00000449206 961 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 SNORD121B-201ENST00000458838 81 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC108860.1-201ENST00000484521 383 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 RNA5SP216-201ENST00000516111 123 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 RNU2-27P-201ENST00000516185 142 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 RNU6-714P-201ENST00000516963 103 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC104027.1-201ENST00000521887 300 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AL391001.1-201ENST00000602747 715 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC013444.2-201ENST00000603317 787 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AL136981.2-201ENST00000617319 734 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AP003355.3-201ENST00000623465 114 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 AL513185.3-201ENST00000433335 1300 ntBASIC3.14□□□□□ -1.91
DDX28Q9NUL7 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
DDX28Q9NUL7 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC068647.1-201ENST00000489539 2265 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 AC092435.3-201ENST00000565538 3654 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 MFSD8-233ENST00000641482 4860 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
DDX28Q9NUL7 RNU6-462P-201ENST00000362659 105 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 U8.11-201ENST00000384699 133 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 U8.12-201ENST00000384701 133 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 MIR491-201ENST00000384877 84 ntBASIC3.13□□□□□ -1.91
DDX28Q9NUL7 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms