Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RNU6-11P-201ENST00000364234 107 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AC109471.1-201ENST00000511631 612 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 Y_RNA.681-201ENST00000516445 113 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AC103810.1-201ENST00000579873 453 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AC011712.1-201ENST00000588959 234 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 VN1R74P-201ENST00000613259 503 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 GTF2IP9-201ENST00000502460 301 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AC015720.1-201ENST00000565251 277 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AL049840.6-202ENST00000603373 279 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 AC002546.1-201ENST00000588041 2504 ntBASIC1.62□□□□□ -2.15
VPS13AQ96RL7 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC1.62□□□□□ -2.15
VPS13AQ96RL7 DDX10P1-201ENST00000448545 1933 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 SNORA26.7-201ENST00000391288 122 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 DHFRP5-201ENST00000406944 564 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 RNU6-174P-201ENST00000410406 106 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 NIFKP8-201ENST00000560500 874 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 MIR4506-201ENST00000584693 77 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 ZNF876P-202ENST00000398732 1485 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 Y_RNA.393-201ENST00000383936 102 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 HMGN2P18-201ENST00000450680 270 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 COX6CP5-201ENST00000527162 228 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 AC060766.3-201ENST00000591442 263 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 AL137847.3-201ENST00000611521 109 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.61□□□□□ -2.15
VPS13AQ96RL7 RPS3AP23-202ENST00000574601 686 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 AC098679.5-201ENST00000624394 571 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 AC091895.1-201ENST00000624494 256 ntBASIC1.61□□□□□ -2.15
VPS13AQ96RL7 AC009541.1-201ENST00000438279 2662 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 RNU6-249P-201ENST00000363016 102 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 RNU1-22P-201ENST00000363334 158 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 Y_RNA.433-201ENST00000384089 102 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 HMGB1P45-201ENST00000435986 653 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 AL353093.1-201ENST00000441292 436 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 HMGB1P26-201ENST00000452520 628 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 RNU6-717P-201ENST00000459076 104 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 SUMO2P6-201ENST00000505273 288 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 RNU4-51P-201ENST00000364206 140 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 SNORD6-201ENST00000365444 73 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 HMGB3P15-201ENST00000507326 574 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 MIR98-201ENST00000606724 119 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 AL157834.3-201ENST00000615543 103 ntBASIC1.6□□□□□ -2.15
VPS13AQ96RL7 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
VPS13AQ96RL7 AC034222.1-201ENST00000494052 532 ntBASIC1.59□□□□□ -2.15
VPS13AQ96RL7 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.59□□□□□ -2.15
VPS13AQ96RL7 U73479.1-201ENST00000618062 168 ntBASIC1.59□□□□□ -2.15
VPS13AQ96RL7 AC012150.2-201ENST00000621300 544 ntBASIC1.59□□□□□ -2.15
VPS13AQ96RL7 AP000553.5-201ENST00000641933 54 ntBASIC1.59□□□□□ -2.15
VPS13AQ96RL7 AL512283.1-201ENST00000606756 1384 ntBASIC1.59□□□□□ -2.15
VPS13AQ96RL7 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
VPS13AQ96RL7 MTND5P7-201ENST00000413558 1798 ntBASIC1.59□□□□□ -2.15
VPS13AQ96RL7 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
VPS13AQ96RL7 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
VPS13AQ96RL7 CDC27P3-201ENST00000635418 1910 ntBASIC1.59□□□□□ -2.15
VPS13AQ96RL7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.59□□□□□ -2.15
VPS13AQ96RL7 DNAJC19P6-201ENST00000401853 280 ntBASIC1.59□□□□□ -2.15
VPS13AQ96RL7 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS13AQ96RL7 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 SRIP3-201ENST00000413200 219 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 XKRYP4-201ENST00000414395 483 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 RPL23AP7-203ENST00000449021 469 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 XKRYP5-201ENST00000449659 483 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC1.59□□□□□ -2.16
VPS13AQ96RL7 HMGB1P47-201ENST00000511281 589 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.59□□□□□ -2.16
VPS13AQ96RL7 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
VPS13AQ96RL7 AC087241.2-201ENST00000535801 324 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 MIR1273G-201ENST00000577677 100 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 7SK.7-201ENST00000603504 247 ntBASIC1.59□□□□□ -2.16
VPS13AQ96RL7 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 RNA5SP338-201ENST00000410495 85 ntBASIC1.58□□□□□ -2.16
VPS13AQ96RL7 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms