Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 ADAM5-202ENST00000399789 1942 ntBASIC4.9□□□□□ -1.62
UBE3DQ7Z6J8 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
UBE3DQ7Z6J8 AC019155.1-201ENST00000382242 574 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-190P-201ENST00000384154 102 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 Y_RNA.489-201ENST00000384410 101 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 RNU4-70P-201ENST00000384579 139 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-95P-201ENST00000384697 107 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 MT-TC-201ENST00000387405 66 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-101P-201ENST00000410323 104 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AL669831.1-202ENST00000428504 417 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 NOTCH2P1-201ENST00000443481 624 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 GAPDHP27-201ENST00000447427 1020 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 FABP5P13-201ENST00000452144 328 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 RN7SL222P-201ENST00000476452 299 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AC026979.1-201ENST00000492525 396 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AC005798.1-201ENST00000513715 387 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 RN7SKP277-201ENST00000516895 283 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-352P-201ENST00000516908 107 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AP000827.1-201ENST00000527814 258 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AP003385.6-201ENST00000531603 374 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 GSTP1P1-201ENST00000548078 319 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 RPL23AP84-201ENST00000571193 464 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 MIR4660-201ENST00000583549 74 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 MPP6-209ENST00000625307 126 ntTSL 5 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 MIR4496-201ENST00000635896 61 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 AL450345.1-202ENST00000605741 3881 ntBASIC4.9□□□□□ -1.63
UBE3DQ7Z6J8 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 SNORA17.1-201ENST00000362945 126 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 Y_RNA.389-201ENST00000383924 113 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-1109P-201ENST00000391187 107 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 Y_RNA.645-201ENST00000391229 102 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 U3.32-201ENST00000408116 212 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AC080125.1-201ENST00000414888 684 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AL389915.2-201ENST00000454576 441 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 HMGB3P30-201ENST00000457863 606 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 RN7SL172P-201ENST00000460535 303 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AC104472.2-201ENST00000469035 601 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AC117503.1-201ENST00000472241 394 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 BX284632.1-201ENST00000478218 541 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AF213884.1-201ENST00000488102 463 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 TBCAP3-201ENST00000512475 312 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 RNU6-677P-201ENST00000516914 101 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AC022616.4-201ENST00000522985 181 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AC091516.1-201ENST00000549191 703 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 RN7SL753P-201ENST00000581238 290 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AL161423.1-201ENST00000613700 262 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AL138825.1-201ENST00000618587 192 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 AL732372.2-225ENST00000642124 456 ntBASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.89□□□□□ -1.63
UBE3DQ7Z6J8 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 192.4 ms