Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 OR6K1P-201ENST00000456766 971 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 RN7SL132P-201ENST00000478131 296 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 MTAPP1-201ENST00000489154 819 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 MTCO3P44-201ENST00000510977 541 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC091133.4-201ENST00000511142 308 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC024589.1-201ENST00000512207 263 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 MTND4LP18-201ENST00000526864 291 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 DEFB108A-201ENST00000530110 222 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC234778.2-201ENST00000566241 354 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 MAGOH2P-202ENST00000584384 429 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC006130.2-201ENST00000586202 326 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 BCRP9-201ENST00000605312 388 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 RNU1-30P-201ENST00000606575 163 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC080013.4-201ENST00000607624 649 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC103710.1-201ENST00000610003 901 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AL355073.2-201ENST00000612106 557 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC104010.1-201ENST00000616889 150 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC009318.4-201ENST00000620496 486 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 AC138649.5-201ENST00000637456 137 ntBASIC4.52□□□□□ -1.69
VPS53Q5VIR6 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS53Q5VIR6 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC024560.2-201ENST00000507981 1497 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 RN7SKP226-201ENST00000364912 300 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 RNU6-730P-201ENST00000383954 104 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 RNU6-769P-201ENST00000384407 104 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 MIR3074-201ENST00000384885 81 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 ARF4P3-201ENST00000397387 509 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 MIR548F1-201ENST00000408667 84 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 RNA5SP56-201ENST00000410277 118 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AL591419.1-201ENST00000427423 339 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 BX890604.2-201ENST00000427883 474 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 RPL23AP74-201ENST00000437246 471 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 PGBD4P3-201ENST00000440731 581 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 RPL7P36-201ENST00000444633 681 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 SNRPGP5-201ENST00000456003 220 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 RPL31P50-201ENST00000471002 296 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC093767.1-201ENST00000504523 156 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 RN7SKP209-201ENST00000516888 304 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 COX6CP8-201ENST00000522620 226 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 OR5AP1P-201ENST00000529730 940 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 LARP7P2-201ENST00000575306 125 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AL669831.4-202ENST00000590817 238 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC090578.1-201ENST00000604955 591 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 HMGN2P28-201ENST00000606102 262 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AL121772.2-201ENST00000614331 297 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC008250.2-201ENST00000615261 205 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 U6.42-201ENST00000618440 107 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC073534.2-201ENST00000620377 381 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 AC244205.2-202ENST00000635781 342 ntBASIC4.51□□□□□ -1.69
VPS53Q5VIR6 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS53Q5VIR6 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC095050.2-201ENST00000510748 1458 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 Y_RNA.248-201ENST00000364501 109 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 RNU6-533P-201ENST00000384144 107 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 SNORD3H-201ENST00000384486 214 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 MIR181A1-201ENST00000385026 110 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 RNU6-952P-201ENST00000391164 108 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 DHFRP6-201ENST00000401776 268 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 MTND4LP20-201ENST00000402379 270 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 Y_RNA.608-201ENST00000410647 95 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 EI24P1-201ENST00000416584 867 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC244098.2-201ENST00000422068 99 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 RSU1P2-202ENST00000437884 485 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms