Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP41Q3LFD5 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 U8.14-201ENST00000390843 143 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 MTCYBP36-201ENST00000404146 440 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 MIR1305-201ENST00000408300 86 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC092447.6-201ENST00000414578 210 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 DBIP2-201ENST00000419076 262 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC244035.1-201ENST00000430042 390 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC005019.1-201ENST00000436455 431 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AP000542.1-201ENST00000448473 371 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 DNAJC19P1-201ENST00000455312 319 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 HMGB1P25-201ENST00000468402 607 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC068724.1-201ENST00000487100 792 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AP001025.2-201ENST00000490908 477 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC078817.1-201ENST00000492623 435 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC080014.1-201ENST00000496877 1201 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC021678.1-201ENST00000505195 936 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 TXNP6-201ENST00000510190 310 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 SNORA70.14-201ENST00000516205 110 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 RNA5SP309-201ENST00000516670 106 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC060788.1-201ENST00000521318 469 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 HIGD1AP10-201ENST00000527837 282 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC099489.2-201ENST00000574976 260 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC090616.5-202ENST00000582111 297 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 PRELID3BP8-201ENST00000604148 295 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC004853.1-201ENST00000604902 698 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC011816.2-201ENST00000607089 556 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC135507.1-201ENST00000607214 561 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC008121.2-201ENST00000614647 523 ntBASIC3.8□□□□□ -1.8
USP41Q3LFD5 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP41Q3LFD5 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.8□□□□□ -1.8
USP41Q3LFD5 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP41Q3LFD5 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP41Q3LFD5 RNU4-35P-201ENST00000362588 141 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 RNU5F-6P-201ENST00000362979 116 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 RNU6-1249P-201ENST00000363237 111 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 RNU6-853P-201ENST00000364306 107 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 Y_RNA.234-201ENST00000364409 97 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AL356421.1-201ENST00000403255 413 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AIMP1P1-201ENST00000418670 937 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 RPS27AP14-201ENST00000422868 454 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AL445669.1-201ENST00000426743 755 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 NDUFB1P1-201ENST00000435191 180 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 BMI1P1-201ENST00000445879 941 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC004801.2-202ENST00000463559 283 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC008155.2-201ENST00000464337 397 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC025518.1-201ENST00000479856 347 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC022447.3-201ENST00000506865 495 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC116347.2-201ENST00000514912 523 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 RNU6-714P-201ENST00000516963 103 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC037471.2-201ENST00000564941 598 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AL353997.4-201ENST00000586196 166 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC055876.5-201ENST00000605667 259 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 BRDTP1-201ENST00000605735 677 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 AC012360.2-201ENST00000609349 391 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 RNVU1-4-201ENST00000612985 164 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 U4.6-201ENST00000621618 127 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 C2orf27A-204ENST00000623058 969 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 CRYM-AS1-204ENST00000637983 556 ntBASIC3.79□□□□□ -1.8
USP41Q3LFD5 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.79□□□□□ -1.8
USP41Q3LFD5 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms