Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXC1Q12948 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.61□□□□□ -1.51
FOXC1Q12948 MAPK10-270ENST00000641102 3538 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 BX322650.1-201ENST00000332359 2143 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
FOXC1Q12948 Y_RNA.7-201ENST00000362352 102 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXC1Q12948 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
FOXC1Q12948 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
FOXC1Q12948 RNU6-239P-201ENST00000390990 99 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 AL022722.2-201ENST00000402519 180 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 RNU6-1064P-201ENST00000410626 104 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 RPL30P13-201ENST00000418873 348 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 EBAG9P1-201ENST00000418955 543 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC5.61□□□□□ -1.51
FOXC1Q12948 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXC1Q12948 AC073901.1-201ENST00000462471 408 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 RPS17P15-201ENST00000475609 349 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 HMGB3P3-201ENST00000510526 400 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.61□□□□□ -1.51
FOXC1Q12948 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.61□□□□□ -1.51
FOXC1Q12948 AC090281.1-201ENST00000523019 276 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
FOXC1Q12948 AP004242.1-201ENST00000533701 349 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXC1Q12948 AP004607.2-201ENST00000533949 322 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.61□□□□□ -1.51
FOXC1Q12948 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.61□□□□□ -1.51
FOXC1Q12948 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 AC055872.1-201ENST00000570978 278 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 RPL23AP87-202ENST00000573039 466 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 MIR4480-201ENST00000582492 71 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.61□□□□□ -1.51
FOXC1Q12948 AC025588.3-201ENST00000604182 274 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 AC005828.6-201ENST00000606610 232 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 AL731532.2-201ENST00000623542 1953 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 AP000432.2-201ENST00000624164 2048 ntBASIC5.61□□□□□ -1.51
FOXC1Q12948 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXC1Q12948 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.61□□□□□ -1.51
FOXC1Q12948 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
FOXC1Q12948 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 RMST-210ENST00000640149 2844 ntTSL 5 BASIC5.61□□□□□ -1.51
FOXC1Q12948 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
FOXC1Q12948 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXC1Q12948 CTAGE11P-201ENST00000451540 2353 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXC1Q12948 AC135776.4-201ENST00000624300 1904 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXC1Q12948 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXC1Q12948 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXC1Q12948 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXC1Q12948 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXC1Q12948 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.6□□□□□ -1.51
FOXC1Q12948 RNA5SP350-201ENST00000363298 111 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 RNU6-270P-201ENST00000364131 105 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 Y_RNA.238-201ENST00000364441 102 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 RNU4-56P-201ENST00000364700 142 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 RNU6-318P-201ENST00000384283 103 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 Y_RNA.534-201ENST00000384599 112 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 RNU6-21P-201ENST00000384710 107 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 MIR1302-4-201ENST00000408701 150 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 RPL21P40-201ENST00000428586 483 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 AC091390.1-201ENST00000433904 331 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXC1Q12948 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXC1Q12948 snoU13.7-201ENST00000459220 104 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXC1Q12948 AC083982.1-201ENST00000485679 344 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXC1Q12948 RNU6-914P-201ENST00000516749 109 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 RNU6-612P-201ENST00000516909 102 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC5.6□□□□□ -1.51
FOXC1Q12948 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXC1Q12948 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXC1Q12948 uc_338.18-201ENST00000615451 175 ntBASIC5.6□□□□□ -1.51
FOXC1Q12948 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC5.6□□□□□ -1.51
FOXC1Q12948 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
FOXC1Q12948 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
FOXC1Q12948 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXC1Q12948 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.6□□□□□ -1.51
FOXC1Q12948 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
FOXC1Q12948 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
FOXC1Q12948 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
FOXC1Q12948 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
FOXC1Q12948 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
FOXC1Q12948 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
FOXC1Q12948 CLCA3P-203ENST00000490028 2781 ntBASIC5.59□□□□□ -1.51
FOXC1Q12948 SAGE4P-201ENST00000442271 3381 ntBASIC5.59□□□□□ -1.51
FOXC1Q12948 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
FOXC1Q12948 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms