Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.54□□□□□ -1.68
GFRA1P56159 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.54□□□□□ -1.68
GFRA1P56159 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 PRO1804-201ENST00000623780 2050 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 RNU6-715P-201ENST00000365204 103 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 MIR124-3-201ENST00000384866 87 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 SNORA16.2-201ENST00000390991 127 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 MIR450B-201ENST00000401182 78 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 MTCYBP4-201ENST00000401524 249 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AL139039.1-201ENST00000401900 692 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AL035079.1-201ENST00000405210 287 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 RPLP0P7-201ENST00000416050 667 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.54□□□□□ -1.68
GFRA1P56159 PDSS1P1-201ENST00000422953 1114 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 MTATP6P4-201ENST00000427725 675 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.54□□□□□ -1.68
GFRA1P56159 AL359073.1-201ENST00000448036 403 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AL162388.1-201ENST00000450912 352 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 NIPA2P5-201ENST00000452282 464 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.54□□□□□ -1.68
GFRA1P56159 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.54□□□□□ -1.68
GFRA1P56159 AC091180.1-201ENST00000462104 372 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.54□□□□□ -1.68
GFRA1P56159 AC027575.1-201ENST00000481064 460 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 MTND5P5-201ENST00000503764 376 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 HMGB3P15-201ENST00000507326 574 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.54□□□□□ -1.68
GFRA1P56159 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.54□□□□□ -1.68
GFRA1P56159 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.54□□□□□ -1.68
GFRA1P56159 COPS8P3-201ENST00000526024 482 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AP005639.2-201ENST00000527592 928 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.54□□□□□ -1.68
GFRA1P56159 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.54□□□□□ -1.68
GFRA1P56159 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.54□□□□□ -1.68
GFRA1P56159 MIR4660-201ENST00000583549 74 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 PRPF19P1-201ENST00000584766 898 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AC011487.3-201ENST00000593607 453 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 AL627309.6-201ENST00000606857 840 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.54□□□□□ -1.68
GFRA1P56159 Z73965.1-201ENST00000623412 2297 ntBASIC4.54□□□□□ -1.68
GFRA1P56159 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.54□□□□□ -1.68
GFRA1P56159 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.54□□□□□ -1.68
GFRA1P56159 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
GFRA1P56159 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.53□□□□□ -1.68
GFRA1P56159 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.53□□□□□ -1.68
GFRA1P56159 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 MIR369-201ENST00000362155 70 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 RNU6-288P-201ENST00000363690 104 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 RNU6-173P-201ENST00000364215 104 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 SNORD42.2-201ENST00000365570 69 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AL591212.2-201ENST00000433923 257 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 Y_RNA.639-201ENST00000458981 102 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 snoU13.20-201ENST00000459180 104 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.53□□□□□ -1.68
GFRA1P56159 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.53□□□□□ -1.68
GFRA1P56159 RPS27P27-201ENST00000498779 255 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 MRPS33P2-201ENST00000507850 322 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.53□□□□□ -1.68
GFRA1P56159 TBCAP3-201ENST00000512475 312 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.53□□□□□ -1.68
GFRA1P56159 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.53□□□□□ -1.68
GFRA1P56159 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.53□□□□□ -1.68
GFRA1P56159 IMMP1LP2-201ENST00000552954 492 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.53□□□□□ -1.68
GFRA1P56159 NDUFB4P11-201ENST00000560510 395 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AC040958.1-201ENST00000561102 201 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.53□□□□□ -1.68
GFRA1P56159 MIR4436B2-201ENST00000581415 91 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 MIR4436B1-201ENST00000583272 91 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 MIR3171-201ENST00000584270 74 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 HMGB2P1-201ENST00000591146 634 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AL360085.1-201ENST00000604713 532 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AL162730.1-201ENST00000605734 292 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AC022893.3-201ENST00000607665 437 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 AC008013.2-202ENST00000637965 364 ntBASIC4.53□□□□□ -1.68
GFRA1P56159 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.53□□□□□ -1.68
GFRA1P56159 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
GFRA1P56159 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms