Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.89□□□□□ -1.95
LIM2P55344 HMGB1P15-201ENST00000453854 435 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.89□□□□□ -1.95
LIM2P55344 snoU13.22-201ENST00000459428 104 ntBASIC2.89□□□□□ -1.95
LIM2P55344 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
LIM2P55344 RPL7P18-201ENST00000478965 734 ntBASIC2.89□□□□□ -1.95
LIM2P55344 RN7SL20P-201ENST00000488827 297 ntBASIC2.89□□□□□ -1.95
LIM2P55344 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
LIM2P55344 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.89□□□□□ -1.95
LIM2P55344 AC004062.1-201ENST00000509926 645 ntBASIC2.89□□□□□ -1.95
LIM2P55344 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.89□□□□□ -1.95
LIM2P55344 AC093677.1-201ENST00000514414 678 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AC008885.1-201ENST00000514930 301 ntBASIC2.89□□□□□ -1.95
LIM2P55344 RNA5SP380-201ENST00000517190 98 ntBASIC2.89□□□□□ -1.95
LIM2P55344 RN7SKP57-201ENST00000517248 293 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AP001372.4-201ENST00000524889 472 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.89□□□□□ -1.95
LIM2P55344 MIR5047-201ENST00000579212 100 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.89□□□□□ -1.95
LIM2P55344 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.89□□□□□ -1.95
LIM2P55344 VN1R82P-201ENST00000601481 356 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AC006254.3-201ENST00000603353 884 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AL450336.1-201ENST00000605180 586 ntBASIC2.89□□□□□ -1.95
LIM2P55344 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIM2P55344 AL355810.1-201ENST00000614629 552 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AP002782.1-201ENST00000623107 614 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AC231657.1-201ENST00000624313 397 ntBASIC2.89□□□□□ -1.95
LIM2P55344 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.89□□□□□ -1.95
LIM2P55344 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.89□□□□□ -1.95
LIM2P55344 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.89□□□□□ -1.95
LIM2P55344 AC116618.1-201ENST00000634617 774 ntBASIC2.89□□□□□ -1.95
LIM2P55344 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.89□□□□□ -1.95
LIM2P55344 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.89□□□□□ -1.95
LIM2P55344 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.89□□□□□ -1.95
LIM2P55344 AC011477.1-204ENST00000623416 1325 ntBASIC2.89□□□□□ -1.95
LIM2P55344 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIM2P55344 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
LIM2P55344 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.88□□□□□ -1.95
LIM2P55344 SGO1P2-201ENST00000429458 1589 ntBASIC2.88□□□□□ -1.95
LIM2P55344 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
LIM2P55344 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
LIM2P55344 AL355596.1-201ENST00000565399 3996 ntBASIC2.88□□□□□ -1.95
LIM2P55344 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
LIM2P55344 MIR22-201ENST00000362190 85 ntBASIC2.88□□□□□ -1.95
LIM2P55344 RNA5SP295-201ENST00000362655 121 ntBASIC2.88□□□□□ -1.95
LIM2P55344 RNA5SP387-201ENST00000364226 106 ntBASIC2.88□□□□□ -1.95
LIM2P55344 SNORA54-201ENST00000384281 123 ntBASIC2.88□□□□□ -1.95
LIM2P55344 RNA5SP129-201ENST00000410276 118 ntBASIC2.88□□□□□ -1.95
LIM2P55344 SSR1P2-201ENST00000415208 787 ntBASIC2.88□□□□□ -1.95
LIM2P55344 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.88□□□□□ -1.95
LIM2P55344 BEND7P1-201ENST00000422058 457 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.88□□□□□ -1.95
LIM2P55344 Z73417.1-201ENST00000447373 778 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AC005297.2-201ENST00000450430 606 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AL353691.1-201ENST00000451332 387 ntBASIC2.88□□□□□ -1.95
LIM2P55344 CFTRP1-201ENST00000456646 183 ntBASIC2.88□□□□□ -1.95
LIM2P55344 RNU7-136P-201ENST00000458819 69 ntBASIC2.88□□□□□ -1.95
LIM2P55344 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
LIM2P55344 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.88□□□□□ -1.95
LIM2P55344 AC020699.1-201ENST00000505161 445 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AC118282.1-201ENST00000506408 765 ntBASIC2.88□□□□□ -1.95
LIM2P55344 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC2.88□□□□□ -1.95
LIM2P55344 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.88□□□□□ -1.95
LIM2P55344 RNU1-61P-201ENST00000516107 151 ntBASIC2.88□□□□□ -1.95
LIM2P55344 RNY4P37-201ENST00000516225 96 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AC093331.1-201ENST00000521474 169 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.88□□□□□ -1.95
LIM2P55344 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.88□□□□□ -1.95
LIM2P55344 CR383656.7-201ENST00000548164 174 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.88□□□□□ -1.95
LIM2P55344 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.88□□□□□ -1.95
LIM2P55344 AL353997.4-201ENST00000586196 166 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.88□□□□□ -1.95
LIM2P55344 AL031176.1-201ENST00000604554 466 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AC004853.1-201ENST00000604902 698 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AC112220.3-201ENST00000605502 502 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AC006270.3-201ENST00000605967 1036 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.88□□□□□ -1.95
LIM2P55344 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.88□□□□□ -1.95
LIM2P55344 AL136164.4-201ENST00000625013 2135 ntBASIC2.88□□□□□ -1.95
LIM2P55344 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC2.88□□□□□ -1.95
LIM2P55344 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.88□□□□□ -1.95
LIM2P55344 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
LIM2P55344 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.87□□□□□ -1.95
LIM2P55344 AC073325.2-201ENST00000339545 159 ntBASIC2.87□□□□□ -1.95
LIM2P55344 RNU6-173P-201ENST00000364215 104 ntBASIC2.87□□□□□ -1.95
LIM2P55344 RNU4-28P-201ENST00000364739 141 ntBASIC2.87□□□□□ -1.95
LIM2P55344 Y_RNA.333-201ENST00000365274 102 ntBASIC2.87□□□□□ -1.95
LIM2P55344 RNU6-359P-201ENST00000365466 108 ntBASIC2.87□□□□□ -1.95
LIM2P55344 DEFB109C-201ENST00000382575 264 ntBASIC2.87□□□□□ -1.95
LIM2P55344 DEFB109B-201ENST00000382656 264 ntBASIC2.87□□□□□ -1.95
LIM2P55344 RNU6-1242P-201ENST00000391052 103 ntBASIC2.87□□□□□ -1.95
LIM2P55344 RN7SKP220-201ENST00000410611 288 ntBASIC2.87□□□□□ -1.95
LIM2P55344 AL590103.1-201ENST00000434488 307 ntBASIC2.87□□□□□ -1.95
LIM2P55344 SETP5-201ENST00000437270 562 ntBASIC2.87□□□□□ -1.95
LIM2P55344 AC004866.2-201ENST00000438285 481 ntBASIC2.87□□□□□ -1.95
LIM2P55344 SNRPEP7-201ENST00000438350 220 ntBASIC2.87□□□□□ -1.95
LIM2P55344 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.87□□□□□ -1.95
LIM2P55344 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.87□□□□□ -1.95
LIM2P55344 RPL31P50-201ENST00000471002 296 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms