Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MIR1305-201ENST00000408300 86 ntBASIC3.51□□□□□ -1.85
MSH3P20585 RN7SKP285-201ENST00000410137 318 ntBASIC3.51□□□□□ -1.85
MSH3P20585 RPS29P4-201ENST00000414733 161 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.51□□□□□ -1.85
MSH3P20585 MTCYBP24-201ENST00000420387 1106 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.51□□□□□ -1.85
MSH3P20585 AL389915.1-201ENST00000422463 466 ntBASIC3.51□□□□□ -1.85
MSH3P20585 RPS27AP14-201ENST00000422868 454 ntBASIC3.51□□□□□ -1.85
MSH3P20585 GLRXP1-201ENST00000423261 334 ntBASIC3.51□□□□□ -1.85
MSH3P20585 PSMA6P3-201ENST00000428242 164 ntBASIC3.51□□□□□ -1.85
MSH3P20585 DLGAP5P1-201ENST00000430307 464 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.51□□□□□ -1.85
MSH3P20585 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.51□□□□□ -1.85
MSH3P20585 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.51□□□□□ -1.85
MSH3P20585 AC002381.1-201ENST00000447049 280 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC239367.2-201ENST00000447309 705 ntBASIC3.51□□□□□ -1.85
MSH3P20585 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.51□□□□□ -1.85
MSH3P20585 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.51□□□□□ -1.85
MSH3P20585 SNRPGP9-201ENST00000456025 225 ntBASIC3.51□□□□□ -1.85
MSH3P20585 SUMO2P2-201ENST00000456482 255 ntBASIC3.51□□□□□ -1.85
MSH3P20585 RNU6-956P-201ENST00000458868 103 ntBASIC3.51□□□□□ -1.85
MSH3P20585 RNA5SP269-201ENST00000459032 137 ntBASIC3.51□□□□□ -1.85
MSH3P20585 SNRPGP3-201ENST00000469405 227 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC017015.1-201ENST00000477387 286 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AP002812.1-201ENST00000495378 474 ntBASIC3.51□□□□□ -1.85
MSH3P20585 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.51□□□□□ -1.85
MSH3P20585 PCBP2P3-201ENST00000509726 843 ntBASIC3.51□□□□□ -1.85
MSH3P20585 MTCO3P44-201ENST00000510977 541 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC022447.1-201ENST00000515358 464 ntBASIC3.51□□□□□ -1.85
MSH3P20585 SNORA67.7-201ENST00000516664 135 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC013828.2-201ENST00000532487 235 ntBASIC3.51□□□□□ -1.85
MSH3P20585 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.51□□□□□ -1.85
MSH3P20585 AC006362.1-201ENST00000567392 174 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
MSH3P20585 MIR1254-2-201ENST00000579553 63 ntBASIC3.51□□□□□ -1.85
MSH3P20585 MIR544B-201ENST00000582372 78 ntBASIC3.51□□□□□ -1.85
MSH3P20585 BNIP3P23-201ENST00000599655 511 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.51□□□□□ -1.85
MSH3P20585 BCRP9-201ENST00000605312 388 ntBASIC3.51□□□□□ -1.85
MSH3P20585 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC068276.1-201ENST00000605793 379 ntBASIC3.51□□□□□ -1.85
MSH3P20585 U4.6-201ENST00000621618 127 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.51□□□□□ -1.85
MSH3P20585 AC009093.8-201ENST00000641769 292 ntBASIC3.51□□□□□ -1.85
MSH3P20585 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
MSH3P20585 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
MSH3P20585 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
MSH3P20585 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.51□□□□□ -1.85
MSH3P20585 AC097714.1-201ENST00000511272 1647 ntBASIC3.51□□□□□ -1.85
MSH3P20585 AF127577.6-201ENST00000623352 2191 ntBASIC3.51□□□□□ -1.85
MSH3P20585 NUP58P1-201ENST00000502546 1738 ntBASIC3.5□□□□□ -1.85
MSH3P20585 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
MSH3P20585 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.5□□□□□ -1.85
MSH3P20585 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
MSH3P20585 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
MSH3P20585 RNU5F-6P-201ENST00000362979 116 ntBASIC3.5□□□□□ -1.85
MSH3P20585 RNU4-91P-201ENST00000364778 135 ntBASIC3.5□□□□□ -1.85
MSH3P20585 SNORA73.2-201ENST00000364946 201 ntBASIC3.5□□□□□ -1.85
MSH3P20585 RNY3P10-201ENST00000384764 102 ntBASIC3.5□□□□□ -1.85
MSH3P20585 MIR218-2-201ENST00000385006 110 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AL136116.1-201ENST00000403591 381 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AC109780.2-201ENST00000413467 845 ntBASIC3.5□□□□□ -1.85
MSH3P20585 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.5□□□□□ -1.85
MSH3P20585 AC006366.1-201ENST00000422002 759 ntBASIC3.5□□□□□ -1.85
MSH3P20585 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
MSH3P20585 AC007742.1-201ENST00000425789 329 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.5□□□□□ -1.85
MSH3P20585 AL590233.1-201ENST00000430017 456 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.5□□□□□ -1.85
MSH3P20585 AC073063.1-201ENST00000434352 607 ntBASIC3.5□□□□□ -1.85
MSH3P20585 RPL37P21-201ENST00000435890 276 ntBASIC3.5□□□□□ -1.85
MSH3P20585 ELOCP26-201ENST00000436067 329 ntBASIC3.5□□□□□ -1.85
MSH3P20585 TXNP1-201ENST00000441872 371 ntBASIC3.5□□□□□ -1.85
MSH3P20585 ST13P20-201ENST00000447996 1065 ntBASIC3.5□□□□□ -1.85
MSH3P20585 PAXBP1P1-201ENST00000449315 447 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AC106872.3-201ENST00000495104 446 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AC022447.3-201ENST00000506865 495 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AC034159.1-201ENST00000513885 583 ntBASIC3.5□□□□□ -1.85
MSH3P20585 IGKV2D-19-201ENST00000523346 262 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AP004242.1-201ENST00000533701 349 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AP000873.5-201ENST00000533906 236 ntBASIC3.5□□□□□ -1.85
MSH3P20585 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.5□□□□□ -1.85
MSH3P20585 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.5□□□□□ -1.85
MSH3P20585 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.5□□□□□ -1.85
MSH3P20585 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.5□□□□□ -1.85
MSH3P20585 AC083760.1-201ENST00000589621 670 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AL390208.1-201ENST00000605885 644 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AC087752.4-201ENST00000605911 462 ntBASIC3.5□□□□□ -1.85
MSH3P20585 RMST_8.1-201ENST00000610287 165 ntBASIC3.5□□□□□ -1.85
MSH3P20585 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.5□□□□□ -1.85
MSH3P20585 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.5□□□□□ -1.85
MSH3P20585 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.5□□□□□ -1.85
MSH3P20585 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.5□□□□□ -1.85
MSH3P20585 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.5□□□□□ -1.85
MSH3P20585 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.5□□□□□ -1.85
MSH3P20585 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
MSH3P20585 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
MSH3P20585 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
MSH3P20585 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSH3P20585 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms