Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNU6-60P-201ENST00000364792 103 ntBASIC1.84□□□□□ -2.12
COL6A3P12111 RNU6-328P-201ENST00000390887 106 ntBASIC1.84□□□□□ -2.12
COL6A3P12111 AL138787.1-202ENST00000437804 898 ntBASIC1.84□□□□□ -2.12
COL6A3P12111 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC1.84□□□□□ -2.12
COL6A3P12111 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.84□□□□□ -2.12
COL6A3P12111 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.84□□□□□ -2.12
COL6A3P12111 TPMTP1-201ENST00000592307 737 ntBASIC1.84□□□□□ -2.12
COL6A3P12111 AL353770.2-201ENST00000620024 78 ntBASIC1.84□□□□□ -2.12
COL6A3P12111 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
COL6A3P12111 SNORA70.7-201ENST00000384159 133 ntBASIC1.84□□□□□ -2.12
COL6A3P12111 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.84□□□□□ -2.12
COL6A3P12111 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.84□□□□□ -2.12
COL6A3P12111 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC1.84□□□□□ -2.12
COL6A3P12111 AC008126.1-201ENST00000549019 480 ntBASIC1.84□□□□□ -2.12
COL6A3P12111 MIR6086-201ENST00000638065 55 ntBASIC1.84□□□□□ -2.12
COL6A3P12111 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
COL6A3P12111 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.83□□□□□ -2.12
COL6A3P12111 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL6A3P12111 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC1.83□□□□□ -2.12
COL6A3P12111 RNU2-20P-201ENST00000410425 191 ntBASIC1.83□□□□□ -2.12
COL6A3P12111 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC1.83□□□□□ -2.12
COL6A3P12111 AC107015.1-201ENST00000466902 747 ntBASIC1.83□□□□□ -2.12
COL6A3P12111 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.83□□□□□ -2.12
COL6A3P12111 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.83□□□□□ -2.12
COL6A3P12111 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC1.83□□□□□ -2.12
COL6A3P12111 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.83□□□□□ -2.12
COL6A3P12111 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL6A3P12111 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL6A3P12111 Y_RNA.294-201ENST00000364916 102 ntBASIC1.83□□□□□ -2.12
COL6A3P12111 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.83□□□□□ -2.12
COL6A3P12111 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC1.83□□□□□ -2.12
COL6A3P12111 GSTA11P-201ENST00000452866 669 ntBASIC1.83□□□□□ -2.12
COL6A3P12111 AC021382.1-201ENST00000483523 359 ntBASIC1.83□□□□□ -2.12
COL6A3P12111 SNORA70.14-201ENST00000516205 110 ntBASIC1.83□□□□□ -2.12
COL6A3P12111 CBX3P5-201ENST00000552017 521 ntBASIC1.83□□□□□ -2.12
COL6A3P12111 AC080078.3-201ENST00000605407 463 ntBASIC1.83□□□□□ -2.12
COL6A3P12111 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC1.83□□□□□ -2.12
COL6A3P12111 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
COL6A3P12111 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
COL6A3P12111 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
COL6A3P12111 AC092447.7-201ENST00000422212 1621 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.82□□□□□ -2.12
COL6A3P12111 AP000705.1-201ENST00000454567 350 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A3P12111 AC022790.1-201ENST00000522872 204 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.82□□□□□ -2.12
COL6A3P12111 AL157834.3-201ENST00000615543 103 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A3P12111 AC000367.1-201ENST00000452711 1766 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 RNU1-42P-201ENST00000364033 160 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 MTND1P18-201ENST00000448191 573 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 AC092989.1-201ENST00000481235 277 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 RNA5SP385-201ENST00000515947 110 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC1.82□□□□□ -2.12
COL6A3P12111 AP001148.1-201ENST00000624124 2359 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 RPS3AP44-201ENST00000425466 790 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 SDR42E1P3-201ENST00000438345 502 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 AC107393.1-201ENST00000512403 346 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.82□□□□□ -2.12
COL6A3P12111 AC068135.2-201ENST00000569293 1028 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 SNORD53B-201ENST00000577887 78 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 FAM106DP-201ENST00000586416 501 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 AC022513.1-201ENST00000624512 117 ntBASIC1.82□□□□□ -2.12
COL6A3P12111 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC1.81□□□□□ -2.12
COL6A3P12111 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC1.81□□□□□ -2.12
COL6A3P12111 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
COL6A3P12111 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC1.81□□□□□ -2.12
COL6A3P12111 AL365400.1-201ENST00000431854 640 ntBASIC1.81□□□□□ -2.12
COL6A3P12111 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC1.81□□□□□ -2.12
COL6A3P12111 AC023043.3-201ENST00000593113 385 ntBASIC1.81□□□□□ -2.12
COL6A3P12111 U73479.1-201ENST00000618062 168 ntBASIC1.81□□□□□ -2.12
COL6A3P12111 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC1.81□□□□□ -2.12
COL6A3P12111 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.81□□□□□ -2.12
COL6A3P12111 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
COL6A3P12111 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC1.81□□□□□ -2.12
COL6A3P12111 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
COL6A3P12111 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
COL6A3P12111 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC1.81□□□□□ -2.12
COL6A3P12111 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.81□□□□□ -2.12
COL6A3P12111 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.81□□□□□ -2.12
COL6A3P12111 DBF4P1-201ENST00000412976 1892 ntBASIC1.81□□□□□ -2.12
COL6A3P12111 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
COL6A3P12111 AC244517.1-201ENST00000606030 2086 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
COL6A3P12111 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 DYNLT3P1-201ENST00000378574 347 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 SNORA68.2-201ENST00000391263 128 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 USP9YP10-201ENST00000454868 628 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 TTC39CP1-201ENST00000512513 755 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 AC019176.1-201ENST00000518519 225 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 AC008127.2-201ENST00000549925 1075 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 AC016727.2-201ENST00000603988 621 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC1.8□□□□□ -2.12
COL6A3P12111 BX649567.1-201ENST00000642071 1134 ntBASIC1.8□□□□□ -2.12
COL6A3P12111 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
COL6A3P12111 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.8□□□□□ -2.12
COL6A3P12111 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms