Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
PRKNO60260 AC007685.1-201ENST00000329806 452 ntBASIC3.4□□□□□ -1.87
PRKNO60260 SNORA71.3-201ENST00000362582 128 ntBASIC3.4□□□□□ -1.87
PRKNO60260 Y_RNA.234-201ENST00000364409 97 ntBASIC3.4□□□□□ -1.87
PRKNO60260 Y_RNA.493-201ENST00000384422 102 ntBASIC3.4□□□□□ -1.87
PRKNO60260 MIR153-1-201ENST00000384914 90 ntBASIC3.4□□□□□ -1.87
PRKNO60260 RNA5SP171-201ENST00000391071 115 ntBASIC3.4□□□□□ -1.87
PRKNO60260 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKNO60260 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKNO60260 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKNO60260 RPS3AP44-201ENST00000425466 790 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.4□□□□□ -1.87
PRKNO60260 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.4□□□□□ -1.87
PRKNO60260 USP9YP7-201ENST00000436723 430 ntBASIC3.4□□□□□ -1.87
PRKNO60260 RPL22P17-201ENST00000438729 315 ntBASIC3.4□□□□□ -1.87
PRKNO60260 USP9YP32-201ENST00000452432 430 ntBASIC3.4□□□□□ -1.87
PRKNO60260 NDUFAF4P4-201ENST00000454883 502 ntBASIC3.4□□□□□ -1.87
PRKNO60260 SNRPGP5-201ENST00000456003 220 ntBASIC3.4□□□□□ -1.87
PRKNO60260 RPS20P32-201ENST00000456044 356 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 snoU109.1-201ENST00000459339 135 ntBASIC3.4□□□□□ -1.87
PRKNO60260 LARP1BP2-201ENST00000486594 519 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC034222.1-201ENST00000494052 532 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC112204.1-201ENST00000502591 103 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKNO60260 BTF3L4P4-201ENST00000506381 449 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 HMGN1P11-201ENST00000508668 303 ntBASIC3.4□□□□□ -1.87
PRKNO60260 NDUFB4P2-201ENST00000509515 391 ntBASIC3.4□□□□□ -1.87
PRKNO60260 RN7SKP298-201ENST00000515950 94 ntBASIC3.4□□□□□ -1.87
PRKNO60260 RNU6-27P-201ENST00000516146 107 ntBASIC3.4□□□□□ -1.87
PRKNO60260 RNA5SP143-201ENST00000516936 115 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.4□□□□□ -1.87
PRKNO60260 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.4□□□□□ -1.87
PRKNO60260 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.4□□□□□ -1.87
PRKNO60260 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKNO60260 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.4□□□□□ -1.87
PRKNO60260 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKNO60260 AC010546.1-201ENST00000569391 485 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC137800.2-201ENST00000574375 120 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC090615.1-201ENST00000577519 154 ntBASIC3.4□□□□□ -1.87
PRKNO60260 VN1R79P-201ENST00000593540 513 ntBASIC3.4□□□□□ -1.87
PRKNO60260 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 AC087241.4-201ENST00000612441 480 ntBASIC3.4□□□□□ -1.87
PRKNO60260 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.4□□□□□ -1.87
PRKNO60260 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 MIR4727-201ENST00000622232 55 ntBASIC3.4□□□□□ -1.87
PRKNO60260 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
PRKNO60260 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKNO60260 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
PRKNO60260 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PRKNO60260 MAPK10-372ENST00000641954 3413 ntBASIC3.4□□□□□ -1.87
PRKNO60260 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKNO60260 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.39□□□□□ -1.87
PRKNO60260 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKNO60260 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
PRKNO60260 RNU6-989P-201ENST00000362756 107 ntBASIC3.39□□□□□ -1.87
PRKNO60260 RNU6-1207P-201ENST00000384343 107 ntBASIC3.39□□□□□ -1.87
PRKNO60260 MIR200C-201ENST00000384980 68 ntBASIC3.39□□□□□ -1.87
PRKNO60260 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
PRKNO60260 RPS20P2-201ENST00000402520 389 ntBASIC3.39□□□□□ -1.87
PRKNO60260 Y_RNA.608-201ENST00000410647 95 ntBASIC3.39□□□□□ -1.87
PRKNO60260 RNU6-248P-201ENST00000410720 107 ntBASIC3.39□□□□□ -1.87
PRKNO60260 ATP5A1P2-201ENST00000412323 255 ntBASIC3.39□□□□□ -1.87
PRKNO60260 HMGB3P23-201ENST00000414981 585 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.39□□□□□ -1.87
PRKNO60260 HMGB3P20-201ENST00000417997 600 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC245054.1-201ENST00000420944 258 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC069157.1-201ENST00000421749 137 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC092832.1-201ENST00000422934 400 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC005517.2-201ENST00000424673 553 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC010975.2-201ENST00000427781 588 ntBASIC3.39□□□□□ -1.87
PRKNO60260 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.39□□□□□ -1.87
PRKNO60260 AC099563.1-201ENST00000456086 418 ntBASIC3.39□□□□□ -1.87
PRKNO60260 snoU13.8-201ENST00000458890 104 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AP000873.1-201ENST00000463987 400 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKNO60260 AC096751.1-202ENST00000502691 1067 ntBASIC3.39□□□□□ -1.87
PRKNO60260 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKNO60260 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.39□□□□□ -1.87
PRKNO60260 MTND2P33-201ENST00000506452 1031 ntBASIC3.39□□□□□ -1.87
PRKNO60260 FTH1P9-201ENST00000513251 355 ntBASIC3.39□□□□□ -1.87
PRKNO60260 RNU6-714P-201ENST00000516963 103 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.39□□□□□ -1.87
PRKNO60260 OR8L1P-201ENST00000534005 955 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.39□□□□□ -1.87
PRKNO60260 AC009063.1-201ENST00000563342 702 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC009101.1-201ENST00000568135 242 ntBASIC3.39□□□□□ -1.87
PRKNO60260 MIR3913-1-201ENST00000577744 102 ntBASIC3.39□□□□□ -1.87
PRKNO60260 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.39□□□□□ -1.87
PRKNO60260 AC009977.1-201ENST00000586015 570 ntBASIC3.39□□□□□ -1.87
PRKNO60260 MIR92B-201ENST00000607575 96 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC138749.5-201ENST00000611461 208 ntBASIC3.39□□□□□ -1.87
PRKNO60260 AC006329.2-201ENST00000611491 394 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms