Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 CPHL1P-201ENST00000461341 3407 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 SNORD56.2-201ENST00000363242 71 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 DEFB109C-201ENST00000382575 264 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 DEFB109B-201ENST00000382656 264 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 SNORA9-201ENST00000384215 133 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 SNORA36C-201ENST00000384289 132 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 RNU6-192P-201ENST00000391253 100 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 RPL27AP8-201ENST00000424277 446 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 NANOGNBP1-201ENST00000448444 480 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AL500522.2-201ENST00000448562 343 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 C1DP4-201ENST00000455429 424 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 RPL37P25-201ENST00000507308 276 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AC105914.1-201ENST00000511798 226 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 RNU7-51P-201ENST00000516560 62 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AC055876.1-202ENST00000567053 138 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AC007179.3-201ENST00000604976 235 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AC136475.10-201ENST00000620253 385 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 OR5AK4P-201ENST00000635912 903 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 AP001642.1-201ENST00000624727 2117 ntBASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC9Q9Y3X0 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC008079.2-201ENST00000623543 20396 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 UBBP2-201ENST00000376781 231 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC018630.2-202ENST00000422992 927 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 FCF1P1-201ENST00000432690 571 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 Z74696.2-201ENST00000436514 498 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC140076.1-201ENST00000449897 361 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 SNORD97-201ENST00000459187 142 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC021660.1-201ENST00000465006 554 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AL049874.1-201ENST00000489560 388 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 RN7SL691P-201ENST00000494487 301 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 RNA5SP519-201ENST00000516480 119 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AL355836.1-201ENST00000555951 870 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 RPL21P12-201ENST00000559810 515 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC010546.1-201ENST00000569391 485 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 EIF1P4-201ENST00000572664 335 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 BDH2P1-201ENST00000602288 736 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AL161729.3-201ENST00000603533 673 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC073534.2-201ENST00000620377 381 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AC110801.1-201ENST00000623590 212 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 AL672296.1-201ENST00000427780 2158 ntBASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
CCDC9Q9Y3X0 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 Y_RNA.3-201ENST00000362331 103 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 RNU6-511P-201ENST00000363496 107 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 MIR491-201ENST00000384877 84 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 MIR3065-201ENST00000390137 79 ntBASIC5.85□□□□□ -1.47
CCDC9Q9Y3X0 AL583835.1-201ENST00000399570 407 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms