Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 CD86-204ENST00000469710 1604 ntTSL 2 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 RNA5SP319-201ENST00000362768 119 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 RNU6-806P-201ENST00000365147 105 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 RNU6-1179P-201ENST00000384667 107 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 SNORA69.1-201ENST00000390904 137 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AL133270.1-201ENST00000402635 279 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 RNU2-71P-201ENST00000411395 189 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 EIF4EP2-201ENST00000422816 654 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AL590762.4-201ENST00000425885 253 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AC099677.3-201ENST00000427081 395 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 RPS20P1-201ENST00000434853 354 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 RN7SL352P-201ENST00000466002 277 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AC105384.2-201ENST00000508433 640 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 RNU6-570P-201ENST00000517051 105 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AC021678.3-201ENST00000517893 476 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AC109329.1-201ENST00000518744 317 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 BNIP3P5-201ENST00000562290 498 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 TXNP4-201ENST00000575018 310 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AL355877.2-201ENST00000603670 358 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AC008814.1-201ENST00000603797 406 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AL121917.1-203ENST00000605534 577 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 AC107294.1-201ENST00000609524 467 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 MIR1244-1-201ENST00000612829 85 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 MIR1244-3-201ENST00000635744 85 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 MIR1244-2-201ENST00000636449 85 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 MIR1244-4-202ENST00000636813 85 ntBASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 TTC41P-205ENST00000551270 3963 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 Y_RNA.26-201ENST00000362539 101 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 Y_RNA.416-201ENST00000384014 113 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AC006946.1-201ENST00000429106 328 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 LINC01399-202ENST00000458450 244 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AC087588.1-201ENST00000462203 316 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 RN7SL860P-201ENST00000473738 223 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AC072052.1-201ENST00000496556 306 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 APOOP4-201ENST00000513530 597 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 MIR892C-201ENST00000516410 77 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 SNORD84-203ENST00000584275 78 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 MIR3976-201ENST00000606807 139 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 U2.22-201ENST00000636441 106 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 AC073136.1-201ENST00000449426 2884 ntBASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIMD1Q9UGP4 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.44
LIMD1Q9UGP4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC6.02□□□□□ -1.44
LIMD1Q9UGP4 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 GTF2IP4-201ENST00000453092 2054 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 RNU1-76P-201ENST00000362903 159 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 RNU1-59P-201ENST00000364829 162 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 MIR550A3-201ENST00000390735 95 ntBASIC6.02□□□□□ -1.45
LIMD1Q9UGP4 PIGPP3-201ENST00000425307 415 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms