Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 TPT1P8-201ENST00000510120 555 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC104986.1-201ENST00000517978 436 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC022080.3-201ENST00000544433 482 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 BNIP3P40-201ENST00000596017 556 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 BNIP3P26-201ENST00000600827 554 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 RPP40P2-201ENST00000603596 712 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC055876.5-201ENST00000605667 259 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC106052.1-201ENST00000608029 497 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC116096.1-201ENST00000566804 2314 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC000403.1-201ENST00000613696 3585 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 MTND5P27-201ENST00000428871 1720 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AC010733.2-201ENST00000589496 5702 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 SNORA44-201ENST00000384584 132 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AL513175.2-201ENST00000422071 443 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AC007327.1-201ENST00000447461 264 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AC092155.2-201ENST00000454675 477 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 RPL7P23-201ENST00000493874 747 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 HIGD1AP17-201ENST00000554576 276 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AL049838.1-201ENST00000563647 981 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 MAGOH2P-202ENST00000584384 429 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 BNIP3P24-201ENST00000593398 557 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AC006213.4-201ENST00000616184 634 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 AC009039.2-201ENST00000624524 529 ntBASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS54Q9P1Q0 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AL049780.3-201ENST00000624612 1583 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AP003122.5-201ENST00000527668 3766 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 RNU6-50P-201ENST00000362356 103 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 RNU6-560P-201ENST00000364007 108 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 SNORA9.2-201ENST00000365361 133 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 DEFB109C-201ENST00000382575 264 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 DEFB109B-201ENST00000382656 264 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC079780.1-201ENST00000428259 207 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 USP9YP24-201ENST00000434374 697 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC093156.1-201ENST00000440382 670 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 USP9YP17-201ENST00000444617 696 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC005297.2-201ENST00000450430 606 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 USP9YP34-201ENST00000453983 808 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 NECAP1P2-201ENST00000455668 727 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 snoU109.4-201ENST00000458953 143 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AP004217.1-201ENST00000480579 346 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 SCGB1D5P-201ENST00000515134 247 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 SNORA74D-201ENST00000516404 141 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 SLC2A13P1-201ENST00000531560 322 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AL132857.1-201ENST00000555180 708 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 MTND1P8-201ENST00000571424 950 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AP001269.3-201ENST00000588718 329 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC245036.5-201ENST00000596330 847 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 DUXAP3-201ENST00000603616 594 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC069304.2-201ENST00000605154 435 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC009974.1-201ENST00000608881 455 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AL590240.3-201ENST00000621416 943 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 MIR1322-201ENST00000638013 71 ntBASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VPS54Q9P1Q0 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.34□□□□□ -1.88
VPS54Q9P1Q0 AP002907.1-201ENST00000606361 1430 ntBASIC3.34□□□□□ -1.88
VPS54Q9P1Q0 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 MTND5P19-201ENST00000424872 1794 ntBASIC3.33□□□□□ -1.88
VPS54Q9P1Q0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms