Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AP006245.1-201ENST00000522549 120 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AL391156.1-201ENST00000554965 554 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 MED28P6-201ENST00000558776 231 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC034268.2-201ENST00000571784 482 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 OR4K8P-201ENST00000578842 1048 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AL353997.4-201ENST00000586196 166 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC012443.1-201ENST00000605605 231 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC106028.5-201ENST00000610332 395 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 TAB3P1-202ENST00000452645 1634 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC011477.1-204ENST00000623416 1325 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 FRG1BP-201ENST00000278882 761 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AL161781.1-201ENST00000354277 403 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 SNORA5A-201ENST00000384111 134 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 RPL21P17-201ENST00000397467 475 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AL591034.1-201ENST00000407447 340 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 RN7SKP53-201ENST00000411337 315 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 RPS29P4-201ENST00000414733 161 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 RPL22P18-201ENST00000417197 377 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 YPEL5P1-201ENST00000419731 367 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 MTCO2P21-201ENST00000419780 677 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 RPL21P32-201ENST00000419877 477 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC091286.1-201ENST00000431233 461 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC084357.1-201ENST00000473404 255 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC104563.1-201ENST00000476147 376 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 RPL7P23-201ENST00000493874 747 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC093281.2-201ENST00000510153 597 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 SNORA70.24-201ENST00000517233 118 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC105185.1-201ENST00000518705 535 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC245166.1-201ENST00000521012 253 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC007991.1-201ENST00000522680 631 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 DUXAP1-201ENST00000556632 463 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AL596327.1-201ENST00000603629 213 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AL161756.2-201ENST00000604597 246 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AL133507.1-201ENST00000605269 557 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC107952.2-201ENST00000606048 486 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 U3.45-201ENST00000607547 219 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 AC079228.1-201ENST00000624774 1049 ntBASIC3.16□□□□□ -1.9
DDX28Q9NUL7 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
DDX28Q9NUL7 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
DDX28Q9NUL7 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 Y_RNA.234-201ENST00000364409 97 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 RPS24P7-201ENST00000416921 246 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AL035423.1-201ENST00000420331 213 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC245054.1-201ENST00000420944 258 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 OR2B8P-201ENST00000432841 938 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 MTND1P32-201ENST00000433043 938 ntBASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.15□□□□□ -1.91
DDX28Q9NUL7 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms