Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 RSL24D1P6-201ENST00000426934 401 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC093106.2-201ENST00000428212 385 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC009238.2-201ENST00000431026 355 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 HIGD1AP11-201ENST00000438361 280 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 GAPDHP58-201ENST00000438477 1006 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC099799.1-201ENST00000439809 192 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AL359672.1-201ENST00000442302 409 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC007967.1-201ENST00000455422 1159 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC009127.1-201ENST00000467090 155 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 RPL31P60-201ENST00000478450 367 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AP001086.1-201ENST00000494882 321 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC072052.1-201ENST00000496556 306 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC104136.1-201ENST00000512969 394 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 RNU6-699P-201ENST00000517081 110 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC026371.1-201ENST00000551867 419 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 MIR1269B-201ENST00000580405 75 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AL512624.1-201ENST00000613638 469 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 RPSAP73-201ENST00000614820 330 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 MAPK10-328ENST00000641553 4009 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 AC092376.2-201ENST00000622621 4116 ntBASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
UBE3DQ7Z6J8 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 Y_RNA.152-201ENST00000363578 100 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RNU6-715P-201ENST00000365204 103 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 SNORA63.7-201ENST00000365579 123 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 Y_RNA.380-201ENST00000365663 111 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 SNORA41-201ENST00000384675 132 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 MIR600-201ENST00000385007 98 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RN7SKP16-201ENST00000410180 299 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RN7SKP229-201ENST00000410465 302 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RNU2-47P-201ENST00000410649 186 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RPL21P109-201ENST00000422213 475 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RPL30P3-201ENST00000424262 333 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RPL7P37-201ENST00000425095 738 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC008065.1-201ENST00000428525 348 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AL645568.3-201ENST00000433683 316 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 ELOCP18-201ENST00000434209 337 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RPL7AP61-201ENST00000443410 636 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 HMGB1P25-201ENST00000468402 607 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC087385.1-201ENST00000475062 312 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC096745.1-201ENST00000509945 370 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RNU6-1332P-201ENST00000516666 104 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RNU6-323P-201ENST00000521915 107 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC024940.3-201ENST00000538551 316 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 MIR4716-201ENST00000579628 84 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC104695.3-201ENST00000604052 296 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AL355297.3-201ENST00000604082 446 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 AC126915.2-201ENST00000610957 190 ntBASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.91□□□□□ -1.62
UBE3DQ7Z6J8 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
UBE3DQ7Z6J8 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
UBE3DQ7Z6J8 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.62
UBE3DQ7Z6J8 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.9□□□□□ -1.62
UBE3DQ7Z6J8 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
UBE3DQ7Z6J8 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
UBE3DQ7Z6J8 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 160.1 ms