Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 ANP32BP3-201ENST00000559213 706 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 HSPE1P3-201ENST00000559254 309 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AC090312.1-201ENST00000580637 348 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 BNIP3P11-201ENST00000603878 563 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AL035413.2-201ENST00000604801 525 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AL592436.1-201ENST00000605135 558 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AC023043.4-201ENST00000612081 449 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AL020991.1-201ENST00000612314 373 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AC078899.5-201ENST00000612475 178 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AC007742.2-201ENST00000618226 398 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AP003122.6-201ENST00000623831 495 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 AC110994.2-201ENST00000635481 492 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 MIR1321-201ENST00000637766 79 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 FAM35DP-201ENST00000323387 2712 ntBASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF549Q6P9A3 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MTND4P12-201ENST00000498999 1377 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 SPRR2C-201ENST00000290702 219 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 Y_RNA.295-201ENST00000364918 102 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 RNU6-213P-201ENST00000384051 104 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 HLFP1-201ENST00000402375 499 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 RPS20P2-201ENST00000402520 389 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MIR320C1-201ENST00000408566 88 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AMD1P2-201ENST00000412936 992 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 TPMTP2-201ENST00000414372 726 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 RPS3AP9-201ENST00000417027 792 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 PIGFP2-201ENST00000421400 651 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MTND1P14-201ENST00000427400 950 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MTCO2P11-201ENST00000431069 680 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 SNRPEP7-201ENST00000438350 220 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC239809.1-201ENST00000450470 217 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 ELOCP23-201ENST00000452014 332 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MTCO3P20-201ENST00000454926 688 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 C1DP4-201ENST00000455429 424 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MTND1P11-201ENST00000456661 876 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 RPL21P11-201ENST00000461458 483 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 APOOP2-201ENST00000461561 539 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 RBM43P1-201ENST00000476891 1081 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MTND1P3-201ENST00000484956 952 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 RNF138P1-201ENST00000502765 546 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC114967.1-201ENST00000504890 259 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC006390.1-201ENST00000508068 283 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC105914.1-201ENST00000511798 226 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 Y_RNA.693-201ENST00000516641 110 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 GLYCAM1-201ENST00000546596 285 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AL157394.1-201ENST00000562983 1224 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AL133457.1-201ENST00000564251 987 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC107954.1-201ENST00000565906 727 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC120057.2-201ENST00000571520 271 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 BRDTP1-201ENST00000605735 677 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AL355816.1-201ENST00000607951 118 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 AC091905.1-201ENST00000624400 311 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 CCT4P2-201ENST00000233836 1548 ntBASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF549Q6P9A3 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 AL022578.1-201ENST00000439330 1433 ntBASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 OR11H5P-202ENST00000641612 1325 ntBASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 OR5J1P-201ENST00000313544 939 ntBASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 Y_RNA.1-201ENST00000352915 104 ntBASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 RN7SKP227-201ENST00000364445 330 ntBASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 RNA5SP283-201ENST00000365604 119 ntBASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 RNU6-483P-201ENST00000384088 108 ntBASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 RPL23AP48-201ENST00000406913 488 ntBASIC3.79□□□□□ -1.8
ZNF549Q6P9A3 PRELID3BP11-201ENST00000414230 479 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms