Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 RNU6-1120P-201ENST00000362988 108 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 Y_RNA.145-201ENST00000363527 102 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 RNU4-1-201ENST00000363925 141 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 Y_RNA.422-201ENST00000384054 114 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 RNU6-463P-201ENST00000384340 107 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 RNU6-456P-201ENST00000384493 107 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 Y_RNA.579-201ENST00000390939 94 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 AL590290.1-201ENST00000405336 380 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.55□□□□□ -1.68
USP39Q53GS9 OR1AA1P-201ENST00000419597 916 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 SRIP2-201ENST00000428470 166 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 RPS24P8-201ENST00000431490 402 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 PPIAP13-201ENST00000434706 478 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 RPS3AP54-201ENST00000435535 734 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 HMGB1P18-201ENST00000438801 619 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.55□□□□□ -1.68
USP39Q53GS9 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.55□□□□□ -1.68
USP39Q53GS9 Y_RNA.639-201ENST00000458981 102 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 AC130509.1-201ENST00000464158 433 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.55□□□□□ -1.68
USP39Q53GS9 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.55□□□□□ -1.68
USP39Q53GS9 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.55□□□□□ -1.68
USP39Q53GS9 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.55□□□□□ -1.68
USP39Q53GS9 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.55□□□□□ -1.68
USP39Q53GS9 RNU6-1046P-201ENST00000516538 107 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 HMGB1P19-201ENST00000517578 577 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.55□□□□□ -1.68
USP39Q53GS9 RN7SL176P-201ENST00000580352 264 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.55□□□□□ -1.68
USP39Q53GS9 MIR92B-201ENST00000607575 96 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 AL355816.1-201ENST00000607951 118 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 AL356585.4-201ENST00000623078 1229 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.55□□□□□ -1.68
USP39Q53GS9 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.55□□□□□ -1.68
USP39Q53GS9 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
USP39Q53GS9 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 OR51H2P-202ENST00000641424 3046 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
USP39Q53GS9 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP39Q53GS9 MTND5P16-201ENST00000460269 1703 ntBASIC4.55□□□□□ -1.68
USP39Q53GS9 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.54□□□□□ -1.68
USP39Q53GS9 AC025125.1-201ENST00000624743 1922 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.54□□□□□ -1.68
USP39Q53GS9 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.54□□□□□ -1.68
USP39Q53GS9 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.54□□□□□ -1.68
USP39Q53GS9 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
USP39Q53GS9 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.54□□□□□ -1.68
USP39Q53GS9 OR5P1P-201ENST00000299512 925 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
USP39Q53GS9 Y_RNA.315-201ENST00000365117 102 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 SNORA33.2-201ENST00000365413 134 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 RNU6-43P-201ENST00000384302 107 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 RNU6-510P-201ENST00000391239 108 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 RNU6-628P-201ENST00000410675 107 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 RNU2-8P-201ENST00000410727 190 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 MTCYBP8-201ENST00000422855 651 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AC233981.1-201ENST00000423224 461 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 RPL23AP38-201ENST00000423801 469 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.54□□□□□ -1.68
USP39Q53GS9 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.54□□□□□ -1.68
USP39Q53GS9 AC236972.2-201ENST00000434979 310 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AL136380.1-201ENST00000447970 162 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 NDUFS5P3-201ENST00000450668 321 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 CACYBPP2-201ENST00000453625 678 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 RPS4XP18-201ENST00000495480 763 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 SNORD60.2-201ENST00000516883 86 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 BTF3P12-201ENST00000519620 469 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AC008562.1-201ENST00000521763 330 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 COX6B1P6-201ENST00000522347 255 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AC022790.1-201ENST00000522872 204 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.54□□□□□ -1.68
USP39Q53GS9 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.54□□□□□ -1.68
USP39Q53GS9 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.54□□□□□ -1.68
USP39Q53GS9 AC015912.2-201ENST00000571053 181 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 MIR4742-201ENST00000581069 85 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 HMGB2P1-201ENST00000591146 634 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AC006116.10-201ENST00000591836 581 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AC008737.2-201ENST00000599446 118 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 AC103710.3-201ENST00000608157 948 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 OR6R2P-201ENST00000609216 300 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.54□□□□□ -1.68
USP39Q53GS9 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.54□□□□□ -1.68
USP39Q53GS9 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USP39Q53GS9 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
USP39Q53GS9 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
USP39Q53GS9 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms