Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
USP41Q3LFD5 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.83□□□□□ -1.8
USP41Q3LFD5 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP41Q3LFD5 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP41Q3LFD5 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP41Q3LFD5 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP41Q3LFD5 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP41Q3LFD5 EXOC5P1-201ENST00000510543 1969 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 AL672167.1-206ENST00000356293 943 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 RNU1-33P-201ENST00000364249 162 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 RNU6-744P-201ENST00000365557 107 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP41Q3LFD5 RNU6-1316P-201ENST00000384242 108 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 RNU6-837P-201ENST00000391056 108 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 RPS3AP26-201ENST00000398259 784 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 SEPT2P1-201ENST00000419651 180 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 AL365184.2-201ENST00000431139 435 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 ATP5JP1-201ENST00000431631 322 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 AC098826.1-201ENST00000433943 471 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 MRPS18BP2-201ENST00000434310 759 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 HMGN2P21-201ENST00000447764 270 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 EPS15P1-201ENST00000448836 336 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 HMGB3P8-201ENST00000449709 577 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 AL445669.2-201ENST00000454425 421 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 snoU13.3-201ENST00000459441 104 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 AC109486.1-201ENST00000486833 374 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 MTCO3P28-201ENST00000513351 515 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 RN7SKP209-201ENST00000516888 304 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 EEF1B2P4-201ENST00000551398 348 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 ACTR3BP3-201ENST00000565577 979 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 MIR3200-201ENST00000580767 85 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 MIR544B-201ENST00000582372 78 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 U73023.1-201ENST00000603134 700 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 RMST_8.1-201ENST00000610287 165 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 AP003355.3-201ENST00000623465 114 ntBASIC3.82□□□□□ -1.8
USP41Q3LFD5 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.82□□□□□ -1.8
USP41Q3LFD5 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP41Q3LFD5 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP41Q3LFD5 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP41Q3LFD5 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AL161781.1-201ENST00000354277 403 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 RNA5SP258-201ENST00000362750 119 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 SNORD51-201ENST00000384320 80 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP41Q3LFD5 MTHFD2P2-201ENST00000407725 247 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 RN7SKP266-201ENST00000410232 287 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 MTCO1P17-201ENST00000411522 491 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC006548.1-201ENST00000427470 102 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AL512649.1-201ENST00000428997 581 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC007967.1-201ENST00000455422 1159 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 OR6K1P-201ENST00000456766 971 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 snoU13.8-201ENST00000458890 104 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC004069.2-201ENST00000505438 1114 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 MTND5P13-201ENST00000513046 1079 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC011611.1-201ENST00000552179 197 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AL121576.1-201ENST00000556055 276 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AP005136.1-201ENST00000579765 429 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC008507.1-201ENST00000587506 734 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AL022161.1-201ENST00000604390 213 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC006077.1-201ENST00000604746 343 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC009090.3-201ENST00000616553 565 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AL596245.1-201ENST00000618994 362 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 Z69908.1-201ENST00000622603 247 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 AC091905.1-201ENST00000624400 311 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 CR381572.1-201ENST00000625098 102 ntBASIC3.81□□□□□ -1.8
USP41Q3LFD5 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP41Q3LFD5 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms