Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 FAM103A2P-201ENST00000444122 354 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 MTND1P29-201ENST00000448112 647 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AP1S2P1-201ENST00000457344 379 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 RNA5SP269-201ENST00000459032 137 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AP000926.1-201ENST00000479573 241 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 RPL29P14-201ENST00000495837 428 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 NIPA2P2-201ENST00000496376 1083 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 HMGB1P22-201ENST00000505315 124 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 RNU6-1003P-201ENST00000517099 105 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 OR5B10P-201ENST00000532869 642 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC006270.2-201ENST00000578523 652 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC012065.4-201ENST00000602445 679 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC006254.3-201ENST00000603353 884 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AL358072.1-201ENST00000604156 575 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AL034351.1-201ENST00000605288 668 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC025594.3-201ENST00000613068 790 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 AC093591.3-201ENST00000634516 308 ntBASIC3.75□□□□□ -1.81
COL28A1Q2UY09 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL28A1Q2UY09 BDP1P-201ENST00000582658 1990 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 SNORA60-201ENST00000362396 134 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 RNU6-853P-201ENST00000364306 107 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 Y_RNA.510-201ENST00000384511 114 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 U3.20-201ENST00000390909 217 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 SNORA3C-201ENST00000408792 125 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 RNA5SP239-201ENST00000410218 129 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 RAD23BP2-201ENST00000416003 1207 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 MTCO3P12-201ENST00000416718 547 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AL137014.1-201ENST00000420490 1226 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 GDI2P2-201ENST00000445131 608 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 COX6CP12-201ENST00000446748 202 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 RPS11P1-201ENST00000451072 473 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 SNRPFP4-201ENST00000456366 242 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 MTND4LP3-201ENST00000468320 276 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 MTND5P13-201ENST00000513046 1079 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC017037.2-201ENST00000513850 890 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 RN7SKP18-201ENST00000516005 275 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC025881.1-201ENST00000518851 512 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 MTCYBP41-201ENST00000528913 1123 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 MIR5684-201ENST00000585074 65 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AP001981.2-201ENST00000603241 418 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC011451.2-201ENST00000604303 598 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AL031176.1-201ENST00000604554 466 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC091965.4-201ENST00000607691 587 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AL590099.1-201ENST00000615276 138 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 MIR8058-201ENST00000615737 89 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 AC025048.6-202ENST00000627667 438 ntBASIC3.74□□□□□ -1.81
COL28A1Q2UY09 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL28A1Q2UY09 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AP002001.2-201ENST00000529025 1469 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC009902.3-201ENST00000606235 2172 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 AC004925.1-201ENST00000624256 2706 ntBASIC3.73□□□□□ -1.81
COL28A1Q2UY09 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.73□□□□□ -1.81
COL28A1Q2UY09 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms