Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU5A-6P-201ENST00000384136 116 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 SNORD51-201ENST00000384320 80 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 Y_RNA.554-201ENST00000384672 102 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HOXA1P49639 AL583835.1-201ENST00000399570 407 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 RPS16P5-201ENST00000406501 404 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 SNORA11F-201ENST00000408237 128 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 RNA5SP36-201ENST00000410197 133 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 FCF1P9-201ENST00000412546 282 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AL139095.3-201ENST00000419672 1203 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXA1P49639 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXA1P49639 EZH2P1-201ENST00000431167 291 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AL049734.2-201ENST00000441066 616 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXA1P49639 AC112653.1-201ENST00000443851 386 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 RPL29P29-201ENST00000448725 423 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC079448.1-201ENST00000449377 373 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXA1P49639 RPL36AP13-201ENST00000457490 317 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXA1P49639 RPL31P61-201ENST00000496160 376 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC105252.1-201ENST00000503089 286 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA1P49639 PTGES3P3-201ENST00000511479 482 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 RNU2-58P-201ENST00000516403 183 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 RN7SKP116-201ENST00000516902 319 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 IGKV2-38-201ENST00000517443 247 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA1P49639 AP000907.2-201ENST00000530827 353 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.35□□□□□ -1.87
HOXA1P49639 TRAV37-201ENST00000553906 342 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 CENPUP2-201ENST00000555897 1186 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA1P49639 AL356432.3-201ENST00000568952 465 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA1P49639 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA1P49639 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXA1P49639 AL022154.1-201ENST00000604698 785 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 SNORA51-201ENST00000606420 132 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AL139089.1-201ENST00000620372 975 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC091953.2-201ENST00000623979 160 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HOXA1P49639 AP005264.7-201ENST00000625003 745 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AL157786.1-207ENST00000627771 695 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 AC008013.2-202ENST00000637965 364 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA1P49639 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.35□□□□□ -1.87
HOXA1P49639 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA1P49639 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA1P49639 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXA1P49639 AC007496.3-201ENST00000624987 3443 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 DHX40P1-201ENST00000588725 1412 ntBASIC3.35□□□□□ -1.87
HOXA1P49639 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA1P49639 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA1P49639 FRG1BP-201ENST00000278882 761 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA1P49639 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HOXA1P49639 RNU5E-1-201ENST00000362477 120 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 RNU6-821P-201ENST00000390995 107 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 RNU11-4P-201ENST00000391149 133 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXA1P49639 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
HOXA1P49639 AL590139.1-201ENST00000416267 400 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 MTCYBP24-201ENST00000420387 1106 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 FAR2P4-202ENST00000425399 584 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AL353777.1-201ENST00000425552 326 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 OR4K11P-201ENST00000431829 904 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA1P49639 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA1P49639 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 AC093392.2-201ENST00000450682 337 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC006539.3-201ENST00000454258 129 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 RPL38P1-201ENST00000460914 211 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 RPS3AP17-201ENST00000472594 777 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HOXA1P49639 AC055855.1-201ENST00000489563 579 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC091133.4-201ENST00000511142 308 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 NPM1P41-201ENST00000512920 831 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 Y_RNA.672-201ENST00000516289 104 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 RNU6-506P-201ENST00000516553 94 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 RNU6-1220P-201ENST00000517126 108 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 MED28P5-201ENST00000528254 438 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AP003385.6-201ENST00000531603 374 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXA1P49639 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXA1P49639 GNRHR2P1-201ENST00000555315 631 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AL121576.1-201ENST00000556055 276 ntBASIC3.34□□□□□ -1.87
HOXA1P49639 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXA1P49639 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXA1P49639 AC037471.2-201ENST00000564941 598 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms