Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.25□□□□□ -1.89
SOX3P41225 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.25□□□□□ -1.89
SOX3P41225 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.25□□□□□ -1.89
SOX3P41225 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.25□□□□□ -1.89
SOX3P41225 AC090615.1-201ENST00000577519 154 ntBASIC3.25□□□□□ -1.89
SOX3P41225 MIR3944-201ENST00000581277 108 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AP001004.1-201ENST00000582468 324 ntBASIC3.25□□□□□ -1.89
SOX3P41225 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.25□□□□□ -1.89
SOX3P41225 AC022146.1-201ENST00000595307 847 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.25□□□□□ -1.89
SOX3P41225 AC105129.3-201ENST00000605455 485 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.25□□□□□ -1.89
SOX3P41225 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.25□□□□□ -1.89
SOX3P41225 AC026422.1-201ENST00000623961 452 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AL021368.2-201ENST00000606125 5352 ntBASIC3.25□□□□□ -1.89
SOX3P41225 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
SOX3P41225 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SOX3P41225 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.25□□□□□ -1.89
SOX3P41225 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SOX3P41225 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.25□□□□□ -1.89
SOX3P41225 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
SOX3P41225 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.25□□□□□ -1.89
SOX3P41225 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SOX3P41225 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SOX3P41225 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.24□□□□□ -1.89
SOX3P41225 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SOX3P41225 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AL513302.2-201ENST00000562313 1842 ntBASIC3.24□□□□□ -1.89
SOX3P41225 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
SOX3P41225 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.24□□□□□ -1.89
SOX3P41225 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
SOX3P41225 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
SOX3P41225 AL161781.1-201ENST00000354277 403 ntBASIC3.24□□□□□ -1.89
SOX3P41225 RNU4-35P-201ENST00000362588 141 ntBASIC3.24□□□□□ -1.89
SOX3P41225 RNA5SP258-201ENST00000362750 119 ntBASIC3.24□□□□□ -1.89
SOX3P41225 RNA5SP50-201ENST00000363731 107 ntBASIC3.24□□□□□ -1.89
SOX3P41225 SNORD116-1-201ENST00000384335 95 ntBASIC3.24□□□□□ -1.89
SOX3P41225 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.24□□□□□ -1.89
SOX3P41225 U3.39-201ENST00000408569 239 ntBASIC3.24□□□□□ -1.89
SOX3P41225 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.24□□□□□ -1.89
SOX3P41225 RN7SKP53-201ENST00000411337 315 ntBASIC3.24□□□□□ -1.89
SOX3P41225 TPMTP3-201ENST00000411928 735 ntBASIC3.24□□□□□ -1.89
SOX3P41225 HMGB1P11-201ENST00000413899 637 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AIMP1P1-201ENST00000418670 937 ntBASIC3.24□□□□□ -1.89
SOX3P41225 RPS15AP6-201ENST00000420703 385 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AL159987.2-201ENST00000432754 307 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.24□□□□□ -1.89
SOX3P41225 LARP1BP3-201ENST00000437229 869 ntBASIC3.24□□□□□ -1.89
SOX3P41225 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
SOX3P41225 HMGN2P21-201ENST00000447764 270 ntBASIC3.24□□□□□ -1.89
SOX3P41225 PRDX3P3-201ENST00000447765 522 ntBASIC3.24□□□□□ -1.89
SOX3P41225 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.24□□□□□ -1.89
SOX3P41225 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.24□□□□□ -1.89
SOX3P41225 HMGN2P7-201ENST00000456186 273 ntBASIC3.24□□□□□ -1.89
SOX3P41225 U3.44-201ENST00000458938 192 ntBASIC3.24□□□□□ -1.89
SOX3P41225 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.24□□□□□ -1.89
SOX3P41225 RPL9P32-201ENST00000464118 620 ntBASIC3.24□□□□□ -1.89
SOX3P41225 RPS4XP10-201ENST00000465034 731 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AC017015.1-201ENST00000477387 286 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AC022447.3-201ENST00000506865 495 ntBASIC3.24□□□□□ -1.89
SOX3P41225 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.24□□□□□ -1.89
SOX3P41225 AC006390.1-201ENST00000508068 283 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AC105313.1-201ENST00000509121 353 ntBASIC3.24□□□□□ -1.89
SOX3P41225 TXNP6-201ENST00000510190 310 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AC034159.1-201ENST00000513885 583 ntBASIC3.24□□□□□ -1.89
SOX3P41225 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.24□□□□□ -1.89
SOX3P41225 AP004247.1-201ENST00000531556 1289 ntBASIC3.24□□□□□ -1.89
SOX3P41225 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.24□□□□□ -1.89
SOX3P41225 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.24□□□□□ -1.89
SOX3P41225 SETP7-201ENST00000552169 453 ntBASIC3.24□□□□□ -1.89
SOX3P41225 ROCK1P1-201ENST00000573767 549 ntBASIC3.24□□□□□ -1.89
SOX3P41225 PIGPP4-201ENST00000584447 307 ntBASIC3.24□□□□□ -1.89
SOX3P41225 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SOX3P41225 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.24□□□□□ -1.89
SOX3P41225 AC103710.3-201ENST00000608157 948 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AC022149.2-201ENST00000621061 203 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AC008443.7-201ENST00000622195 246 ntBASIC3.24□□□□□ -1.89
SOX3P41225 AC068647.1-201ENST00000489539 2265 ntBASIC3.24□□□□□ -1.89
SOX3P41225 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SOX3P41225 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SOX3P41225 MTND4P16-201ENST00000466108 1367 ntBASIC3.24□□□□□ -1.89
SOX3P41225 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SOX3P41225 CR383658.2-201ENST00000547576 1525 ntBASIC3.24□□□□□ -1.89
SOX3P41225 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SOX3P41225 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.23□□□□□ -1.89
SOX3P41225 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SOX3P41225 ZNF833P-201ENST00000424938 1494 ntBASIC3.23□□□□□ -1.89
SOX3P41225 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SOX3P41225 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SOX3P41225 AC244517.1-201ENST00000606030 2086 ntBASIC3.23□□□□□ -1.89
SOX3P41225 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.23□□□□□ -1.89
SOX3P41225 RNU6-1249P-201ENST00000363237 111 ntBASIC3.23□□□□□ -1.89
SOX3P41225 SNORD46.1-201ENST00000364139 104 ntBASIC3.23□□□□□ -1.89
SOX3P41225 RNA5SP167-201ENST00000365461 116 ntBASIC3.23□□□□□ -1.89
SOX3P41225 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SOX3P41225 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SOX3P41225 AL021407.1-201ENST00000404531 386 ntBASIC3.23□□□□□ -1.89
SOX3P41225 MIR1302-8-201ENST00000408342 128 ntBASIC3.23□□□□□ -1.89
SOX3P41225 RNA5SP44-201ENST00000410446 133 ntBASIC3.23□□□□□ -1.89
SOX3P41225 RPL7P8-201ENST00000411964 730 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms