Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RNA5SP119-201ENST00000362715 117 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 RNU5F-6P-201ENST00000362979 116 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 Y_RNA.97-201ENST00000363094 102 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXC11O43248 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
HOXC11O43248 MTCYBP36-201ENST00000404146 440 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXC11O43248 SYF2P2-201ENST00000417620 583 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AC090960.1-201ENST00000421072 306 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AL139247.1-201ENST00000422768 325 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXC11O43248 MTATP6P4-201ENST00000427725 675 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 SETP5-201ENST00000437270 562 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXC11O43248 RPL22P17-201ENST00000438729 315 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 RNU7-170P-201ENST00000459303 61 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 snoU13.22-201ENST00000459428 104 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXC11O43248 SETP11-201ENST00000473027 690 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 RPS3AP50-201ENST00000487064 803 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXC11O43248 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXC11O43248 AF131216.2-201ENST00000512316 564 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXC11O43248 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.93□□□□□ -1.78
HOXC11O43248 AC025881.1-201ENST00000518851 512 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXC11O43248 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.93□□□□□ -1.78
HOXC11O43248 DEFB108D-201ENST00000527787 222 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.93□□□□□ -1.78
HOXC11O43248 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXC11O43248 AL133271.1-201ENST00000538229 291 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 SYF2P1-201ENST00000550658 413 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 GNRHR2P1-201ENST00000555315 631 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXC11O43248 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.93□□□□□ -1.78
HOXC11O43248 AC068790.3-201ENST00000602988 553 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AC024220.1-201ENST00000603675 484 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXC11O43248 OR10AB1P-201ENST00000609613 938 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AC068057.2-201ENST00000624047 895 ntBASIC3.93□□□□□ -1.78
HOXC11O43248 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.93□□□□□ -1.78
HOXC11O43248 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.93□□□□□ -1.78
HOXC11O43248 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HOXC11O43248 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HOXC11O43248 MTND5P33-201ENST00000571250 1450 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC007256.1-201ENST00000392253 2765 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC138915.3-201ENST00000562908 1389 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXC11O43248 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXC11O43248 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXC11O43248 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC11O43248 CR381670.1-201ENST00000624291 1693 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HOXC11O43248 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
HOXC11O43248 RNU6-809P-201ENST00000384461 107 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 MT-TH-201ENST00000387441 69 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXC11O43248 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXC11O43248 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXC11O43248 RN7SKP56-201ENST00000410513 331 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXC11O43248 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC006946.1-201ENST00000429106 328 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC091286.1-201ENST00000431233 461 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC090774.1-201ENST00000435925 246 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 RPS23P3-201ENST00000470993 430 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HOXC11O43248 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC11O43248 RPL23AP41-201ENST00000484754 458 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC11O43248 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC11O43248 HMGB3P15-201ENST00000507326 574 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC11O43248 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.92□□□□□ -1.78
HOXC11O43248 RNU1-61P-201ENST00000516107 151 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC11O43248 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC11O43248 AP000907.2-201ENST00000530827 353 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC11O43248 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC11O43248 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC11O43248 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.92□□□□□ -1.78
HOXC11O43248 CCNG2P1-201ENST00000549521 1000 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 UBE2L4-201ENST00000587688 464 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 BDH2P1-201ENST00000602288 736 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC011468.4-201ENST00000603942 409 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC11O43248 AC004067.1-201ENST00000608733 700 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AL591424.2-201ENST00000617023 128 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 XIST_intron.1-201ENST00000619444 68 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AL158801.5-201ENST00000623123 465 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC019226.1-201ENST00000625666 515 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC11O43248 AL034408.1-202ENST00000636088 415 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 AC009093.8-201ENST00000641769 292 ntBASIC3.92□□□□□ -1.78
HOXC11O43248 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HOXC11O43248 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.92□□□□□ -1.78
HOXC11O43248 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms