Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.23□□□□□ -1.89
CLDN3O15551 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.23□□□□□ -1.89
CLDN3O15551 OR5G4P-201ENST00000525251 760 ntBASIC3.23□□□□□ -1.89
CLDN3O15551 FAM35CP-201ENST00000554755 2470 ntBASIC3.23□□□□□ -1.89
CLDN3O15551 AL133393.1-201ENST00000603277 287 ntBASIC3.23□□□□□ -1.89
CLDN3O15551 AC107294.3-201ENST00000609211 526 ntBASIC3.23□□□□□ -1.89
CLDN3O15551 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN3O15551 AC004009.2-201ENST00000623016 728 ntBASIC3.23□□□□□ -1.89
CLDN3O15551 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.23□□□□□ -1.89
CLDN3O15551 MIR1322-201ENST00000638013 71 ntBASIC3.23□□□□□ -1.89
CLDN3O15551 AC090740.1-201ENST00000623193 2262 ntBASIC3.23□□□□□ -1.89
CLDN3O15551 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
CLDN3O15551 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CLDN3O15551 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN3O15551 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CLDN3O15551 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CLDN3O15551 AL513185.3-201ENST00000433335 1300 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLDN3O15551 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLDN3O15551 AC093010.3-201ENST00000570269 15214 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.22□□□□□ -1.89
CLDN3O15551 AP002907.1-201ENST00000606361 1430 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLDN3O15551 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLDN3O15551 RNU6-216P-201ENST00000363282 104 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 RNU6-851P-201ENST00000384565 107 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 RPS4XP3-201ENST00000398541 413 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 RNA5SP38-201ENST00000410750 119 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC007435.1-201ENST00000421086 415 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.22□□□□□ -1.89
CLDN3O15551 USP9YP36-201ENST00000424581 829 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.22□□□□□ -1.89
CLDN3O15551 GTF2IP7-202ENST00000436677 309 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.22□□□□□ -1.89
CLDN3O15551 SUMO2P2-201ENST00000456482 255 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 RPL30P14-201ENST00000482744 348 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC079203.1-201ENST00000487972 404 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC083906.5-201ENST00000503722 328 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.22□□□□□ -1.89
CLDN3O15551 SNORA31.1-201ENST00000515993 133 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 SNORA31.5-201ENST00000516190 133 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.22□□□□□ -1.89
CLDN3O15551 FAM60DP-201ENST00000524174 632 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 OR5AK1P-201ENST00000524837 922 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 MIR3912-201ENST00000577566 105 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.22□□□□□ -1.89
CLDN3O15551 AC112220.2-201ENST00000605513 533 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC069545.1-201ENST00000605671 358 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AP002826.1-201ENST00000608835 315 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 MIR6076-201ENST00000617521 113 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AL138955.1-201ENST00000622881 1040 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC010872.1-201ENST00000624225 675 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AC120349.2-201ENST00000625002 298 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 CRYM-AS1-204ENST00000637983 556 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 AL035425.3-201ENST00000564206 4996 ntBASIC3.22□□□□□ -1.89
CLDN3O15551 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.89
CLDN3O15551 AC011460.1-201ENST00000636268 1834 ntBASIC3.21□□□□□ -1.89
CLDN3O15551 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLDN3O15551 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CLDN3O15551 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLDN3O15551 RNU6-298P-201ENST00000390888 96 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AL450338.1-201ENST00000407987 512 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AL161449.1-201ENST00000414531 1199 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 EEF1A1P41-201ENST00000414667 207 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.21□□□□□ -1.9
CLDN3O15551 MRPS36P1-201ENST00000421291 307 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 TMEM167AP1-201ENST00000423409 219 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.21□□□□□ -1.9
CLDN3O15551 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.21□□□□□ -1.9
CLDN3O15551 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.21□□□□□ -1.9
CLDN3O15551 MTCO3P11-201ENST00000455103 774 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.21□□□□□ -1.9
CLDN3O15551 AC080014.1-201ENST00000496877 1201 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.21□□□□□ -1.9
CLDN3O15551 SCGB1D5P-201ENST00000515134 247 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CLDN3O15551 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CLDN3O15551 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.21□□□□□ -1.9
CLDN3O15551 AC055876.1-202ENST00000567053 138 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 MIR4637-201ENST00000582405 84 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AC006116.7-201ENST00000590141 756 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AC097504.2-201ENST00000608088 454 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AC092574.1-201ENST00000609771 420 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 AC009237.15-201ENST00000610252 501 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 TUG1_1.1-201ENST00000610654 145 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.21□□□□□ -1.9
CLDN3O15551 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.21□□□□□ -1.9
CLDN3O15551 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.21□□□□□ -1.9
CLDN3O15551 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
CLDN3O15551 TAB3P1-202ENST00000452645 1634 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLDN3O15551 CDR1-202ENST00000625883 1485 ntBASIC3.21□□□□□ -1.9
CLDN3O15551 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.21□□□□□ -1.9
CLDN3O15551 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLDN3O15551 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.2□□□□□ -1.9
CLDN3O15551 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLDN3O15551 SNORA9.2-201ENST00000365361 133 ntBASIC3.2□□□□□ -1.9
CLDN3O15551 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms