Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.09□□□□□ -1.91
MSH4O15457 AC004924.1-201ENST00000480160 781 ntBASIC3.09□□□□□ -1.91
MSH4O15457 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH4O15457 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH4O15457 AC026412.2-201ENST00000512270 1075 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.09□□□□□ -1.91
MSH4O15457 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.09□□□□□ -1.91
MSH4O15457 AC087808.1-201ENST00000520501 361 ntBASIC3.09□□□□□ -1.91
MSH4O15457 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
MSH4O15457 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.09□□□□□ -1.91
MSH4O15457 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.09□□□□□ -1.91
MSH4O15457 YWHAZP1-201ENST00000556286 722 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.09□□□□□ -1.91
MSH4O15457 MIR3912-201ENST00000577566 105 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AC006504.3-201ENST00000586818 523 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AC012669.1-201ENST00000603209 283 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AC055876.5-201ENST00000605667 259 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AC005014.3-201ENST00000605985 190 ntBASIC3.09□□□□□ -1.91
MSH4O15457 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.09□□□□□ -1.91
MSH4O15457 MIR6852-201ENST00000621699 66 ntBASIC3.09□□□□□ -1.91
MSH4O15457 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.09□□□□□ -1.92
MSH4O15457 MTND4P34-201ENST00000572715 1371 ntBASIC3.09□□□□□ -1.92
MSH4O15457 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.08□□□□□ -1.92
MSH4O15457 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.08□□□□□ -1.92
MSH4O15457 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
MSH4O15457 RNU6-50P-201ENST00000362356 103 ntBASIC3.08□□□□□ -1.92
MSH4O15457 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
MSH4O15457 MIR181B1-201ENST00000385240 110 ntBASIC3.08□□□□□ -1.92
MSH4O15457 SNRPEP2-201ENST00000397592 279 ntBASIC3.08□□□□□ -1.92
MSH4O15457 RNU2-15P-201ENST00000410692 191 ntBASIC3.08□□□□□ -1.92
MSH4O15457 RNU2-42P-201ENST00000410697 113 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.08□□□□□ -1.92
MSH4O15457 AL449283.1-202ENST00000418249 604 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AC007435.1-201ENST00000421086 415 ntBASIC3.08□□□□□ -1.92
MSH4O15457 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
MSH4O15457 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 USP9YP22-201ENST00000438971 294 ntBASIC3.08□□□□□ -1.92
MSH4O15457 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.08□□□□□ -1.92
MSH4O15457 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 MTND2P19-201ENST00000449129 1012 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.08□□□□□ -1.92
MSH4O15457 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 AC006390.1-201ENST00000508068 283 ntBASIC3.08□□□□□ -1.92
MSH4O15457 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.08□□□□□ -1.92
MSH4O15457 AC034159.1-201ENST00000513885 583 ntBASIC3.08□□□□□ -1.92
MSH4O15457 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.08□□□□□ -1.92
MSH4O15457 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 MIR4319-201ENST00000577285 85 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AC069545.1-201ENST00000605671 358 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.08□□□□□ -1.92
MSH4O15457 AF129408.1-201ENST00000608767 431 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AC005332.6-201ENST00000613178 446 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AC123767.1-202ENST00000620407 817 ntBASIC3.08□□□□□ -1.92
MSH4O15457 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.08□□□□□ -1.92
MSH4O15457 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.08□□□□□ -1.92
MSH4O15457 U6.101-201ENST00000637707 76 ntBASIC3.08□□□□□ -1.92
MSH4O15457 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
MSH4O15457 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.08□□□□□ -1.92
MSH4O15457 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
MSH4O15457 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
MSH4O15457 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
MSH4O15457 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.07□□□□□ -1.92
MSH4O15457 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
MSH4O15457 AC062016.1-201ENST00000355719 319 ntBASIC3.07□□□□□ -1.92
MSH4O15457 RNU5D-1-201ENST00000363299 116 ntBASIC3.07□□□□□ -1.92
MSH4O15457 snoZ40.1-201ENST00000364540 72 ntBASIC3.07□□□□□ -1.92
MSH4O15457 RNU6-1074P-201ENST00000383995 104 ntBASIC3.07□□□□□ -1.92
MSH4O15457 MIR506-201ENST00000384998 124 ntBASIC3.07□□□□□ -1.92
MSH4O15457 MIR9-1-201ENST00000385198 89 ntBASIC3.07□□□□□ -1.92
MSH4O15457 RNU6-1176P-201ENST00000390955 107 ntBASIC3.07□□□□□ -1.92
MSH4O15457 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.07□□□□□ -1.92
MSH4O15457 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
MSH4O15457 AC079780.1-201ENST00000428259 207 ntBASIC3.07□□□□□ -1.92
MSH4O15457 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.07□□□□□ -1.92
MSH4O15457 SLC31A1P1-201ENST00000451221 567 ntBASIC3.07□□□□□ -1.92
MSH4O15457 snoU109.4-201ENST00000458953 143 ntBASIC3.07□□□□□ -1.92
MSH4O15457 AC092754.2-201ENST00000463506 460 ntBASIC3.07□□□□□ -1.92
MSH4O15457 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH4O15457 AC010265.1-201ENST00000513509 211 ntBASIC3.07□□□□□ -1.92
MSH4O15457 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.07□□□□□ -1.92
MSH4O15457 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH4O15457 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.07□□□□□ -1.92
MSH4O15457 AC125611.1-201ENST00000549563 229 ntBASIC3.07□□□□□ -1.92
MSH4O15457 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.07□□□□□ -1.92
MSH4O15457 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.07□□□□□ -1.92
MSH4O15457 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.07□□□□□ -1.92
MSH4O15457 MIR3605-201ENST00000583214 100 ntBASIC3.07□□□□□ -1.92
MSH4O15457 SNORD84-203ENST00000584275 78 ntBASIC3.07□□□□□ -1.92
MSH4O15457 AL390838.2-201ENST00000602394 274 ntBASIC3.07□□□□□ -1.92
MSH4O15457 AC007619.2-201ENST00000605743 379 ntBASIC3.07□□□□□ -1.92
MSH4O15457 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.07□□□□□ -1.92
MSH4O15457 AC099654.8-201ENST00000637757 681 ntBASIC3.07□□□□□ -1.92
MSH4O15457 AC107982.1-201ENST00000507171 1300 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 142 ms