Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 COX6CP12-201ENST00000446748 202 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
HMGB3O15347 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC1.98□□□□□ -2.09
HMGB3O15347 BX248409.1-201ENST00000455497 255 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 snoU109.4-201ENST00000458953 143 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 snoU13.22-201ENST00000459428 104 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AC008427.1-201ENST00000503102 655 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 WBP1LP4-201ENST00000505043 344 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 RNU1-40P-201ENST00000516816 164 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 RNU1-97P-201ENST00000516872 164 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.98□□□□□ -2.09
HMGB3O15347 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGB3O15347 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGB3O15347 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGB3O15347 EEF1B2P4-201ENST00000551398 348 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 PRELID2P1-201ENST00000552837 301 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC1.98□□□□□ -2.09
HMGB3O15347 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC1.98□□□□□ -2.09
HMGB3O15347 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC1.98□□□□□ -2.09
HMGB3O15347 MIR3117-201ENST00000584034 78 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AL356280.1-201ENST00000603614 379 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AC022387.2-201ENST00000604050 448 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AC012443.1-201ENST00000605605 231 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC1.98□□□□□ -2.09
HMGB3O15347 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
HMGB3O15347 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
HMGB3O15347 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
HMGB3O15347 AC009902.3-201ENST00000606235 2172 ntBASIC1.98□□□□□ -2.09
HMGB3O15347 AL137003.2-201ENST00000606924 2538 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
HMGB3O15347 RNU1-85P-201ENST00000364127 164 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
HMGB3O15347 U3.20-201ENST00000390909 217 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 HMGB3P31-201ENST00000413333 595 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 MTND4LP10-201ENST00000435146 291 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC1.97□□□□□ -2.09
HMGB3O15347 AL714022.1-201ENST00000439897 151 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AL358232.1-201ENST00000448030 501 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AL589880.1-201ENST00000448271 287 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 DNAJC19P8-201ENST00000452887 259 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.97□□□□□ -2.09
HMGB3O15347 PABPC1P3-201ENST00000469174 459 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC078857.1-201ENST00000469870 667 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC116337.2-201ENST00000477662 156 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 OR52A4P-202ENST00000481634 799 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC068587.1-201ENST00000483613 781 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC090255.1-201ENST00000495779 349 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 OR52A4P-203ENST00000498233 1014 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC010374.2-201ENST00000512933 535 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 RNA5SP282-201ENST00000516355 108 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 DUXAP2-201ENST00000519198 589 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC109329.2-201ENST00000519658 482 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC1.97□□□□□ -2.09
HMGB3O15347 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.97□□□□□ -2.09
HMGB3O15347 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.97□□□□□ -2.09
HMGB3O15347 AC090888.1-201ENST00000561335 1141 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC1.97□□□□□ -2.09
HMGB3O15347 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC1.97□□□□□ -2.09
HMGB3O15347 AC074051.3-201ENST00000570238 358 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.97□□□□□ -2.09
HMGB3O15347 AL136295.6-201ENST00000610486 658 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 CR589904.2-201ENST00000612533 440 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 HMGB1P24-202ENST00000615653 685 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC1.97□□□□□ -2.09
HMGB3O15347 AC022336.2-201ENST00000568966 2538 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 ZNF90P1-201ENST00000480493 1951 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 AC005336.3-201ENST00000623833 2679 ntBASIC1.97□□□□□ -2.09
HMGB3O15347 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC1.96□□□□□ -2.09
HMGB3O15347 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HMGB3O15347 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
HMGB3O15347 TPTE2P4-201ENST00000258589 1605 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
HMGB3O15347 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
HMGB3O15347 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
HMGB3O15347 RNA5SP456-201ENST00000364002 114 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC1.96□□□□□ -2.1
HMGB3O15347 RNU6-1197P-201ENST00000391183 107 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 RNA5SP21-201ENST00000410917 96 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 RAB28P1-201ENST00000411517 641 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC1.96□□□□□ -2.1
HMGB3O15347 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.96□□□□□ -2.1
HMGB3O15347 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HMGB3O15347 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HMGB3O15347 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.96□□□□□ -2.1
HMGB3O15347 AC012497.1-201ENST00000429392 575 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 ARPC3P1-201ENST00000437218 533 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC1.96□□□□□ -2.1
HMGB3O15347 PGBD4P3-201ENST00000440731 581 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 AL139109.1-201ENST00000455491 297 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 snoU13.28-201ENST00000459235 104 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 EIF4EP3-201ENST00000498782 656 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC1.96□□□□□ -2.1
HMGB3O15347 MAL2-205ENST00000521048 575 ntTSL 4 BASIC1.96□□□□□ -2.1
HMGB3O15347 AC008676.3-201ENST00000521237 435 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.96□□□□□ -2.1
HMGB3O15347 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC1.96□□□□□ -2.1
HMGB3O15347 AP002826.1-201ENST00000608835 315 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 MIR6840-201ENST00000611937 71 ntBASIC1.96□□□□□ -2.1
HMGB3O15347 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms