Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.35□□□□□ -1.55
SOX1O00570 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX1O00570 AC092013.1-201ENST00000438795 332 ntBASIC5.35□□□□□ -1.55
SOX1O00570 AC005094.1-201ENST00000440420 368 ntBASIC5.35□□□□□ -1.55
SOX1O00570 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.35□□□□□ -1.55
SOX1O00570 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC5.35□□□□□ -1.55
SOX1O00570 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SOX1O00570 RPS15AP27-201ENST00000449183 343 ntBASIC5.35□□□□□ -1.55
SOX1O00570 AC005008.1-201ENST00000456151 612 ntBASIC5.35□□□□□ -1.55
SOX1O00570 RPL23AP24-201ENST00000458203 385 ntBASIC5.35□□□□□ -1.55
SOX1O00570 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX1O00570 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX1O00570 AC116337.1-201ENST00000509680 687 ntBASIC5.35□□□□□ -1.55
SOX1O00570 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX1O00570 Y_RNA.708-201ENST00000516950 96 ntBASIC5.35□□□□□ -1.55
SOX1O00570 OR8R1P-201ENST00000543943 764 ntBASIC5.35□□□□□ -1.55
SOX1O00570 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX1O00570 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX1O00570 MIR3941-201ENST00000582572 103 ntBASIC5.35□□□□□ -1.55
SOX1O00570 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.35□□□□□ -1.55
SOX1O00570 AL138960.1-201ENST00000613838 513 ntBASIC5.35□□□□□ -1.55
SOX1O00570 SNX18P1Y-201ENST00000616231 511 ntBASIC5.35□□□□□ -1.55
SOX1O00570 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.35□□□□□ -1.55
SOX1O00570 AC015799.1-201ENST00000622996 3122 ntBASIC5.35□□□□□ -1.55
SOX1O00570 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX1O00570 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.35□□□□□ -1.55
SOX1O00570 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX1O00570 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SOX1O00570 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SOX1O00570 OR4F13P-202ENST00000560066 2054 ntBASIC5.35□□□□□ -1.55
SOX1O00570 AC007159.1-201ENST00000566529 4706 ntBASIC5.35□□□□□ -1.55
SOX1O00570 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.35□□□□□ -1.55
SOX1O00570 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SOX1O00570 AL442128.2-201ENST00000620246 1824 ntBASIC5.34□□□□□ -1.55
SOX1O00570 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SOX1O00570 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SOX1O00570 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.34□□□□□ -1.55
SOX1O00570 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.34□□□□□ -1.55
SOX1O00570 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.34□□□□□ -1.55
SOX1O00570 GABPAP-201ENST00000419271 1356 ntBASIC5.34□□□□□ -1.55
SOX1O00570 RNU6-490P-201ENST00000362985 107 ntBASIC5.34□□□□□ -1.55
SOX1O00570 RNU6-379P-201ENST00000363813 104 ntBASIC5.34□□□□□ -1.55
SOX1O00570 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.34□□□□□ -1.55
SOX1O00570 DEFB109C-201ENST00000382575 264 ntBASIC5.34□□□□□ -1.55
SOX1O00570 DEFB109B-201ENST00000382656 264 ntBASIC5.34□□□□□ -1.55
SOX1O00570 RNU6-1127P-201ENST00000384580 107 ntBASIC5.34□□□□□ -1.55
SOX1O00570 SNORA75.6-201ENST00000391318 127 ntBASIC5.34□□□□□ -1.55
SOX1O00570 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SOX1O00570 AL603908.1-201ENST00000406098 201 ntBASIC5.34□□□□□ -1.55
SOX1O00570 RNA5SP317-201ENST00000410176 116 ntBASIC5.34□□□□□ -1.55
SOX1O00570 RNA5SP311-201ENST00000411290 116 ntBASIC5.34□□□□□ -1.55
SOX1O00570 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.34□□□□□ -1.55
SOX1O00570 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX1O00570 AC016831.4-201ENST00000438302 307 ntBASIC5.34□□□□□ -1.55
SOX1O00570 HMGB1P12-201ENST00000438594 598 ntBASIC5.34□□□□□ -1.55
SOX1O00570 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SOX1O00570 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.34□□□□□ -1.55
SOX1O00570 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX1O00570 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.34□□□□□ -1.55
SOX1O00570 TRBV1-201ENST00000476502 284 ntBASIC5.34□□□□□ -1.55
SOX1O00570 SCARNA22-201ENST00000503991 125 ntBASIC5.34□□□□□ -1.55
SOX1O00570 AC110794.1-201ENST00000505816 425 ntBASIC5.34□□□□□ -1.55
SOX1O00570 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX1O00570 AC108078.2-201ENST00000510750 236 ntBASIC5.34□□□□□ -1.55
SOX1O00570 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX1O00570 GAPDHP62-201ENST00000515313 990 ntBASIC5.34□□□□□ -1.55
SOX1O00570 RNA5SP315-201ENST00000516340 116 ntBASIC5.34□□□□□ -1.55
SOX1O00570 RNA5SP312-201ENST00000517068 116 ntBASIC5.34□□□□□ -1.55
SOX1O00570 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX1O00570 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.34□□□□□ -1.55
SOX1O00570 AC084783.1-201ENST00000565846 910 ntBASIC5.34□□□□□ -1.55
SOX1O00570 AC106782.4-201ENST00000568264 210 ntBASIC5.34□□□□□ -1.55
SOX1O00570 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.34□□□□□ -1.55
SOX1O00570 MIR4293-201ENST00000584305 78 ntBASIC5.34□□□□□ -1.55
SOX1O00570 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.34□□□□□ -1.55
SOX1O00570 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC5.34□□□□□ -1.55
SOX1O00570 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.34□□□□□ -1.55
SOX1O00570 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SOX1O00570 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.34□□□□□ -1.55
SOX1O00570 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SOX1O00570 EXOC5P1-201ENST00000510543 1969 ntBASIC5.34□□□□□ -1.55
SOX1O00570 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
SOX1O00570 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.34□□□□□ -1.56
SOX1O00570 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SOX1O00570 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SOX1O00570 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
SOX1O00570 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
SOX1O00570 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SOX1O00570 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SOX1O00570 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SOX1O00570 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.33□□□□□ -1.56
SOX1O00570 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SOX1O00570 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.33□□□□□ -1.56
SOX1O00570 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SOX1O00570 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.33□□□□□ -1.56
SOX1O00570 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.33□□□□□ -1.56
SOX1O00570 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SOX1O00570 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
SOX1O00570 RNU6-238P-201ENST00000363313 106 ntBASIC5.33□□□□□ -1.56
SOX1O00570 U3.10-201ENST00000364459 214 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms