Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SNRNP40Q96DI7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 RASA4DP-201ENST00000460726 1199 ntBASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 AC092597.1-201ENST00000487352 616 ntBASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
SNRNP40Q96DI7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 AC034232.1-201ENST00000506026 1064 ntBASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.21■□□□□ 0.35
SNRNP40Q96DI7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SNRNP40Q96DI7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.34
SNRNP40Q96DI7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
SNRNP40Q96DI7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 TSSC2-201ENST00000450217 709 ntBASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SNRNP40Q96DI7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.19■□□□□ 0.34
SNRNP40Q96DI7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms