Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 SLC25A6P4-201ENST00000586535 553 ntBASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CSPG4Q6UVK1 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 KRT18P13-201ENST00000400056 1290 ntBASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 PRELID1P1-202ENST00000567272 903 ntBASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 AC073314.1-201ENST00000568729 2216 ntBASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 LINC01311-201ENST00000565162 1445 ntBASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 AC092183.1-201ENST00000469884 875 ntBASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CSPG4Q6UVK1 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 FAM220CP-201ENST00000395253 831 ntBASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 AC011498.5-201ENST00000592027 486 ntBASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
CSPG4Q6UVK1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 AL160286.2-201ENST00000567150 934 ntBASIC15.77■□□□□ 0.11
CSPG4Q6UVK1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CSPG4Q6UVK1 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms