Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.26■□□□□ 0.35
COL6A6A6NMZ7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 AC233702.3-201ENST00000578656 1387 ntBASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 AC055717.3-201ENST00000622967 595 ntBASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
COL6A6A6NMZ7 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 FAM197Y8-203ENST00000450145 560 ntBASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 AC244015.2-201ENST00000616358 1861 ntBASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 HTR5BP-201ENST00000430851 1154 ntBASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL6A6A6NMZ7 KRT8P11-201ENST00000409686 1436 ntBASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 AC027601.4-201ENST00000611259 610 ntBASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 MIR564-202ENST00000385049 94 ntBASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 AC145285.3-201ENST00000564603 959 ntBASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A6A6NMZ7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 MIR4674-201ENST00000582457 87 ntBASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 AC010327.4-202ENST00000591484 748 ntBASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 Z69720.1-201ENST00000601483 472 ntBASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 AL136038.4-201ENST00000603606 1261 ntBASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A6A6NMZ7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms